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UniGene Name: sp_v3.0_unigene65219
Length: 208 nt
 UniGene Fasta
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| >sp_v3.0_unigene65219
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Ace file of the UniGene sp_v3.0_unigene65219
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | DUF1785 domain containing protein | - | - | 1.0e-16 | 66% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 92% |
| Sma3 | Putative argonaute protein | - | - | 1.016e-11 | - |
| Source | Gene names |
|---|---|
| Sma3 | AGO1; AGO2; AGO915; At1g48410; At5g43810; GSVIVT00000886001; GSVIVT00016822001; GSVIVT00020067001; GSVIVT00027767001; LOC_Os03g57560; LOC_Os03g58600; MEAL1; MQD19.17; OJ1103_E04.115; OJ1149_C12.13; OJ1493_H11.13; OSJNBa0005N02.3; OSJNBa0052F07.11; OSJNBa0 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | - |
| Sma3 | endoribonuclease activity | GO:0004521 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | siRNA binding | GO:0035197 | Molecular Function | 0.0 | - |
| Sma3 | miRNA binding | GO:0035198 | Molecular Function | 0.0 | - |
| Sma3 | multicellular organismal development | GO:0007275 | Biological Process | 0.0 | - |
| Sma3 | virus induced gene silencing | GO:0009616 | Biological Process | 0.0 | - |
| Sma3 | response to auxin stimulus | GO:0009733 | Biological Process | 0.0 | - |
| Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
| Sma3 | auxin metabolic process | GO:0009850 | Biological Process | 0.0 | - |
| Sma3 | leaf morphogenesis | GO:0009965 | Biological Process | 0.0 | - |
| Sma3 | response to far red light | GO:0010218 | Biological Process | 0.0 | - |
| Sma3 | RNA interference | GO:0016246 | Biological Process | 0.0 | - |
| Sma3 | stem cell maintenance | GO:0019827 | Biological Process | 0.0 | - |
| Sma3 | somatic stem cell maintenance | GO:0035019 | Biological Process | 0.0 | - |
| Sma3 | gene silencing by miRNA | GO:0035195 | Biological Process | 0.0 | - |
| Sma3 | leaf development | GO:0048366 | Biological Process | 0.0 | - |
| Sma3 | adventitious root development | GO:0048830 | Biological Process | 0.0 | - |
| Sma3 | stem cell development | GO:0048864 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ubiquitin | IPR000626 | - | 0.0 | - |
| Sma3 | Argonaute/Dicer protein, PAZ | IPR003100 | - | 0.0 | - |
| Sma3 | Stem cell self-renewal protein Piwi | IPR003165 | - | 0.0 | - |
| Sma3 | Sugar transporter, conserved site | IPR005829 | - | 0.0 | - |
| Sma3 | Domain of unknown function DUF1785 | IPR014811 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G48410.2 | - | 5.0e-17 | 84% |
| RefSeq | Arabidopsis thaliana | NP_175274.1 | protein argonaute [Arabidopsis thaliana] | 7.0e-17 | 84% |
| RefSeq | Populus trichocarpa | XP_002318338.1 | argonaute protein group [Populus trichocarpa] | 6.0e-19 | 92% |
| Full-Lengther Next Prediction |
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Fln status: C-terminus
Fln database: coniferopsida.fasta
Fln subject: A9NTQ3
Fln msg: your sequence is shorter than subject: 32 - 64
Fln protein:
C
Protein Length:
33
Fln nts:
A
Fln Alignment:
G5KS2UX02JOC7D___VEDNRLERVWKPGVGFTKASGQPKWAC
A9NTQ3_______________VEGNRLERVWKPGAGFTKASGQPKWAC
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
