SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65199

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene65199
AATGTCACAAGGATAAACTTCAGGGCACTGTAAGACTTATTTTTCAACCTGCCGAAGAAGGAGGTGGAGGTGCTGCTCACATGATTCGTGAAGGTGCACTTGGAGATGCAGAAGCCATATTTGCTATGCATGTTATGCCTAGTCACTCAACTGGGACTATAGCATCAACCCCAGGGCCAATTTTGGCTGGGTCAGGCATTTTTGAAGCTGTTATAGAAGAATGAAGATCCAACAATGGCAGCGGAAGA

Ace file of the UniGene sp_v3.0_unigene65199

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA-amino acid hydrolase ILR1, putative n=1 Tax=Ricinus communis RepID=B9S5P0_RICCO	-	-	2.0e-19	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	IAA-amino acid hydrolase ILR1, putative	-	-	6.86e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	1.063e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine biosynthesis	00300		1.063e-24	%
Sma3	Fluorobenzoate degradation	00364		1.063e-24	%
Sma3	Glutathione metabolism	00480		1.063e-24	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.063e-24	%
Sma3	Lipopolysaccharide biosynthesis	00540		1.063e-24	%
Sma3	Sphingolipid metabolism	00600		1.063e-24	%
Sma3	Metabolic pathways	01100		1.063e-24	%
Sma3	Biosynthesis of secondary metabolites	01110		1.063e-24	%
Sma3	Hippurate hydrolase.	EC:3.5.1.32	-	4.115e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylalanine metabolism	00360		4.115e-18	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		4.115e-18	%

Source	Gene names
Sma3	At1g44350; At5g54140; At5g56650; At5g56660; GR1; GSVIVT00015404001; GSVIVT00021549001; GSVIVT00021551001; GSVIVT00028906001; GSVIVT00028908001; GSVIVT00034215001; GSVIVT00037152001; GSVIVT00037153001; IAR; IAR3; IAR33; IAR36; ILL1; ILL10; ILL11; ILL2; ILL

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	IAA-Ala conjugate hydrolase activity	GO:0010179	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	auxin metabolic process	GO:0009850	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3	Amidohydrolase	IPR017439	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G44350.1	ILL6 IAA-leucine resistant (ILR)-like gene 6 chr1:16834749-16838201 REVERSE LENGTH=464	5.0e-21	65%
RefSeq	Arabidopsis thaliana	NP_175086.1	IAA-amino acid hydrolase ILR1-like 6 [Arabidopsis thaliana]	7.0e-21	65%
RefSeq	Populus trichocarpa	XP_002321954.1	iaa-amino acid hydrolase 5, partial [Populus trichocarpa]	2.0e-25	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMJ2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 199 aas, your sequence is shorter than subject: 74 - 456

Fln protein: CHKDKLQGTVRLIFQPAEEGGGGAAHMIREGALGDAEAIFAMHVMPSHSTGTIASTPGPILAGSGIFEAVIEE*

Protein Length: 75

Fln nts: AATGTCACAAGGATAAACTTCAGGGCACTGTAAGACTTATTTTTCAACCTGCCGAAGAAGGAGGTGGAGGTGCTGCTCACATGATTCGTGAAGGTGCACTTGGAGATGCAGAAGCCATATTTGCTATGCATGTTATGCCTAGTCACTCAACTGGGACTATAGCATCAACCCCAGGGCCAATTTTGGCTGGGTCAGGCATTTTTGAAGCTGTTATAGAAGAATGAAGATCCAACAATGGCAGCGGAAGA

Fln Alignment:

G5KS2UX02IUF0K___HKDKLQGTVRLIFQPAEEGGGGAAHMIREGALGDAEAIFAMHVMPSHSTGTIASTPGPILAGSGIFEAVIE
B8LMJ2_______________HKDKLQGTVRLIFQPAEEGGAGAAHMIREGALGDAEAIFAMHVTPGLSTGAIVSIPGPILAGASIFEAVIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain