SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65192

Length: 134 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65192
TCAGAAAACTCTCTTTGAATCACTCCACGAGTCAGGGTTGTCATTTGGGATTTATTACCAGAACATCCCTGCCACTCTGTTTTACAGAAATTTGAGAAAGCTTAAGTACATACCCCATTAAACCAGTACACATT

Ace file of the UniGene sp_v3.0_unigene65192 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipase C [Arabidopsis thaliana] gb\|AAF01582.1\|AC009895_3 hypothetical protein [Arabidopsis thaliana] gb\|AAK59858.1\| AT3g03530/T21P5_5 [Arabidopsis thaliana] gb\|AAN28886.1\| At3g03530/T21P5_5 [Arabidopsis thaliana] dbj\|BAC22508.1\| phosphatidylglycero	-	-	5.0e-10	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Phosphatidylglycerol specific phospholipase C	-	-	9.52e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase C.	EC:3.1.4.3	-	1.467e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	1.467e-08	%
Sma3	Glycerophospholipid metabolism	00564	1.467e-08	%
Sma3	Ether lipid metabolism	00565	1.467e-08	%
Sma3	Metabolic pathways	01100	1.467e-08	%

Source	Gene names
Sma3	At1g07230; At3g03520; At3g03530; At3g03540; At3g48610; F10K1.6; GSVIVT00000809001; GSVIVT00000811001; LOC_Os03g61130; OJ1111_B11.8; OSJNBa0010E04.10; Os03g0826600; OsI_14148; OsJ_13198; PHYPADRAFT_145030; POPTRDRAFT_570272; POPTRDRAFT_571365; POPTRDRAFT_6

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03530.1	NPC4 non-specific phospholipase C4 chr3:842686-844970 REVERSE LENGTH=538	2.0e-14	76%
RefSeq	Arabidopsis thaliana	NP_566206.1	phospholipase C [Arabidopsis thaliana]	3.0e-14	76%
RefSeq	Populus trichocarpa	XP_002318737.1	predicted protein [Populus trichocarpa]	2.0e-15	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVL9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 286 aas, your sequence is shorter than subject: 40 - 503

Fln protein: QKTLFESLHESGLSFGIYYQNIPATLFYRNLRKLKYIPH*

Protein Length: 41

Fln nts: TCAGAAAACTCTCTTTGAATCACTCCACGAGTCAGGGTTGTCATTTGGGATTTATTACCAGAACATCCCTGCCACTCTGTTTTACAGAAATTTGAGAAAGCTTAAGTACATACCCCATTAAACCAGTACACATT

Fln Alignment:

G5KS2UX02F9OPT___QKTLFESLHESGLSFGIYYQNIPATLFYRNLRKLKYI
A9NVL9_______________QKTIFESIDESGLSFGIYYEDIPATMFYRNLRKLKYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain