SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65181

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene65181
AATGTCATGGGTCCCAACTATGTGCCAGCAGGTCAGAAGAAAGATTTATATACAAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACCAAAAATGCTAC

Ace file of the UniGene sp_v3.0_unigene65181

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 2 n=2 Tax=Chlorellales RepID=EF2_PARKE	-	-	4.0e-16	76%
FL-Next	sp=Elongation factor 2; Parachlorella kessleri (Green alga) (Chlorella kessleri).	-	-	0.0	83%
Sma3	Elongation factor 2	-	-	8.16e-16	-

Source	Gene names
Sma3	At1g56070; At1g56070/T6H22.13; At1g56075; CHLREDRAFT_24524; EF-2; EFG2; GSVIVT00025739001; H0613H07.5; MICPUCDRAFT_27460; MICPUN_112653; OSJNBa0020P07.3; OSTLU_52010; Os01g0723000; Os01g0742200; Os02g0519900; Os04g0118400; OsI_03568; OsI_03688; OsI_07431;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56070.1	LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein chr1:20968245-20971077 REVERSE LENGTH=843	5.0e-19	84%
RefSeq	Arabidopsis thaliana	NP_849818.1	elongation factor EF-2 [Arabidopsis thaliana]	7.0e-19	84%
RefSeq	Populus trichocarpa	XP_002310687.1	predicted protein [Populus trichocarpa]	2.0e-19	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P28996

Fln msg: Overlapping hits, possible frame ERROR between 57 and 35, Distance to subject end: 377 aas, your sequence is shorter than subject: 58 - 845

Fln protein: NVMGPNYVPAGxxxxxxxxxSVQRTVIWMGKRQESVEDVPCGNTVALVGLDQFITKNA

Protein Length: 59

Fln nts: AATGTCATGGGTCCCAACTATGTGCCAGCAGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACCAAAAATGCTAC

Fln Alignment:

G5KS2UX02JBZFU___VMGPNYVPAGQxxxxxxxKSVQRTVIWMGKRQESVEDVPCGNTVALVGLDQFITKNA
P28996_______________IMGPNYVP-GQxxxxxxxKTVQRTVLCMGRRQEAVEDVPCGNTVALVGLDQFITKNA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain