SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65178

Length: 126 nt

UniGene Fasta

>sp_v3.0_unigene65178
GCTGATGCTAATTGCTCTATACTACTTGATTTGGGGTGAAGCTGCCAACGTTCGCTATTTGCCTGAATGCATTTGTTATATTTTTCACAGCTCTGGAGGCAGCTCTCAATACACAGTTCCTGTTCC

Ace file of the UniGene sp_v3.0_unigene65178

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative beta 1,3 glucan synthase [Oryza sativa Japonica Group]	-	-	2.0e-08	76%
FL-Next	sp=Callose synthase 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	3.375e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		3.375e-07	%

Source	Gene names
Sma3	At2g36850; CALS10; CalS9; GSL8; GSVIVT00015893001; OsI_21355; OsJ_19875; P0541H01.1; PHYPADRAFT_115455; PHYPADRAFT_127776; PHYPADRAFT_139798; PHYPADRAFT_183682; PHYPADRAFT_207622; POPTRDRAFT_1101561; RCOM_1507480; T1J8.3;

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36850.1	ATGSL08, GSL8, GSL08, ATGSL8, CHOR glucan synthase-like 8 chr2:15454935-15469666 REVERSE LENGTH=1904	2.0e-12	80%
RefSeq	Arabidopsis thaliana	NP_850271.5	callose synthase 10 [Arabidopsis thaliana]	3.0e-12	80%
RefSeq	Populus trichocarpa	XP_002322219.1	predicted protein [Populus trichocarpa]	1.0e-12	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJM0

Fln msg: Distance to subject end: 1516 aas, your sequence is shorter than subject: 41 - 1904

Fln protein: LMLIALYYLIWGEAANVRYLPECICYIFHSSGGSSQYTVPV

Protein Length: 42

Fln nts: GCTGATGCTAATTGCTCTATACTACTTGATTTGGGGTGAAGCTGCCAACGTTCGCTATTTGCCTGAATGCATTTGTTATATTTTTCACAGCTCTGGAGGCAGCTCTCAATACACAGTTCCTGTTCC

Fln Alignment:

G5KS2UX02F3HFK___LMLIALYYLIWGEAANVRYLPECICYIFHS
Q9SJM0_______________LFLVSLYFLIWGEAANVRFLPECICYIFHN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain