SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65122

Length: 142 nt

UniGene Fasta

>sp_v3.0_unigene65122
AATGTGATTCAATGGTTTGAAAGTGATACAGTGCAACCCTTTTTCTATTGGTTGGATGTCGGAGATGGTAGGGATCTCTGTCTTGATTCCTGCCCAAGGGGAAAGTTGCAACAACAGTGCATAAAGTATCTTGGTCCTAAAG

Ace file of the UniGene sp_v3.0_unigene65122

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-binding protein n=1 Tax=Beta vulgaris RepID=A2I5F3_BETVU	-	-	6.0e-14	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Calmodulin binding protein, putative	-	-	3.641e-07	-

Source	Gene names
Sma3	At3g52870; CAM; F8J2_40; GSVIVT00016534001; GSVIVT00021647001; GSVIVT00034127001; POPTRDRAFT_819260; POPTRDRAFT_835741; RCOM_0446100; RCOM_0655220; RCOM_1047210; VITISV_000215; VITISV_024541;

Source	InterPros	Term	Type	e value	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52870.1	IQ calmodulin-binding motif family protein chr3:19593365-19595686 REVERSE LENGTH=456	3.0e-16	65%
RefSeq	Arabidopsis thaliana	NP_190855.1	IQ calmodulin-binding motif family protein [Arabidopsis thaliana]	4.0e-16	65%
RefSeq	Populus trichocarpa	XP_002324731.1	predicted protein [Populus trichocarpa]	6.0e-18	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA39

Fln msg: Distance to subject end: 324 aas, your sequence is shorter than subject: 47 - 581

Fln protein: NVIQWFESDTVQPFFYWLDVGDGRDLCLDSCPRGKLQQQCIKYLGPK

Protein Length: 48

Fln nts: AATGTGATTCAATGGTTTGAAAGTGATACAGTGCAACCCTTTTTCTATTGGTTGGATGTCGGAGATGGTAGGGATCTCTGTCTTGATTCCTGCCCAAGGGGAAAGTTGCAACAACAGTGCATAAAGTATCTTGGTCCTAAAG

Fln Alignment:

G5KS2UX02HYN4B___QWFESDTVQPFFYWLDVGDGRDLCLDSCPRGKLQQQCIKYLGP
D5AA39_______________EWYKKETAQPFFYWLDVGDGRDLNLEDCPRSTLQKQRIKYLSP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain