SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65017

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene65017
AATGTACTGTAGAGGCACATTGTGGTTATGATTTTCCTTGGAGCATTTCAAAGCTATTCCCGTTAGCTGATTTCCATGATTATCATCATCGATTGCTCTATACAAAGTCTGGGATTACTCATCGACTTTCACTTACATGGACTTGGTTATTTGGGACTGATAAAGGGTACCGGAAGCTAAAAGGTCTCCAGAAAGATTCTAAA

Ace file of the UniGene sp_v3.0_unigene65017

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative sterol 4-alpha-methyl-oxidase n=1 Tax=Gossypium arboreum RepID=Q8GTA1_GOSAR	-	-	2.0e-19	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Putative sterol 4-alpha-methyl-oxidase	-	-	1.626e-12	-

Source	Gene names
Sma3	AT1G07420; At1g07420; At2g29390; B1026C12.22; C4MO-1; GSVIVT00018422001; GSVIVT00024234001; LOC_Os11g48020; Os07g0101500; Os11g0707600; OsI_24570; OsI_37101; OsJ_22771; OsJ_34885; PHYPADRAFT_205949; PHYPADRAFT_234297; POPTRDRAFT_723203; POPTRDRAFT_752102;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	C-4 methylsterol oxidase activity	GO:0000254	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	sterol biosynthetic process	GO:0016126	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid hydroxylase	IPR006694	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07420.1	ATSMO2, SMO2-1 sterol 4-alpha-methyl-oxidase 2-1 chr1:2277910-2280033 FORWARD LENGTH=266	7.0e-25	64%
RefSeq	Arabidopsis thaliana	NP_001077974.1	sterol 4-alpha-methyl-oxidase 2-2 [Arabidopsis thaliana]	3.0e-25	66%
RefSeq	Populus trichocarpa	XP_002298337.1	predicted protein [Populus trichocarpa]	3.0e-24	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC0

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 67 - 262

Fln protein: CTVEAHCGYDFPWSISKLFPLADFHDYHHRLLYTKSGITHRLSLTWTWLFGTDKGYRKLKGLQKDSK

Protein Length: 68

Fln nts: AATGTACTGTAGAGGCACATTGTGGTTATGATTTTCCTTGGAGCATTTCAAAGCTATTCCCGTTAGCTGATTTCCATGATTATCATCATCGATTGCTCTATACAAAGTCTGGGATTACTCATCGACTTTCACTTACATGGACTTGGTTATTTGGGACTGATAAAGGGTACCGGAAGCTAAAAGGTCTCCAGAAAGATTCTAAA

Fln Alignment:

G5KS2UX02FMCO1___TVEAHCGYDFPWSISKLFPL---ADFHDYHHRLLYTKSGITHRLSLTWTWLFGTDKGYRKLKGLQKDSK
A9NUC0_______________TVEAHCGYDFPWSFSKIFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWLFGTDKGYRKLKSLQKDSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain