SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64994

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene64994
AATGTAAATAGTATCAGTACATTGAGGCTTAGTAAATTTGCGATTTATTCGTGTATTTTTAGATTCATTGACTAGGGAGGAAGCTGAAGCAGGAGCTTCAGGACAACGGATTGTGAATTTTAGTAACATTGGTGGTTATCAAGGTGCTTTCCTAGCGGGCACAAGACCGGCATGGCTTATGGTCTGTAGAGAACGTCTTCGACTCCATCCACAGTTATGCCATGGGCCTATACTGGCATTTA

Ace file of the UniGene sp_v3.0_unigene64994

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=CPSF 160 kDa subunit emb\|CAD39979.2\| OSJNBa0032B23.5 [Oryza sativa Japonica Group]	-	-	3.0e-17	60%
FL-Next	sp=Probable cleavage and polyadenylation specificity factor subunit 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	60%
Sma3	Probable cleavage and polyadenylation specificity factor subunit 1	-	-	5.586e-10	-

Source	Gene names
Sma3	At5g51660; GSVIVT00038486001; K17N15.21; LOC_Os04g18010; OSJNBa0032B23.5; Os04g0252200; OsI_15095; OsJ_14038; POPTRDRAFT_422815; RCOM_1498840;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51660.1	CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 chr5:20980250-20989268 FORWARD LENGTH=1442	7.0e-20	56%
RefSeq	Arabidopsis thaliana	NP_199979.2	cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana]	1.0e-19	56%
RefSeq	Populus trichocarpa	XP_002318462.1	predicted protein, partial [Populus trichocarpa]	3.0e-24	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XWP1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 466 aas, your sequence is shorter than subject: 80 - 1441

Fln protein: M*IVSVH*GLVNLRFIRVFLDSLTREEAEAGASGQRIVNFSNIGGYQGAFLAGTRPAWLMVCRERLRLHPQLCHGPILAF

Protein Length: 81

Fln nts: AATGTAAATAGTATCAGTACATTGAGGCTTAGTAAATTTGCGATTTATTCGTGTATTTTTAGATTCATTGACTAGGGAGGAAGCTGAAGCAGGAGCTTCAGGACAACGGATTGTGAATTTTAGTAACATTGGTGGTTATCAAGGTGCTTTCCTAGCGGGCACAAGACCGGCATGGCTTATGGTCTGTAGAGAACGTCTTCGACTCCATCCACAGTTATGCCATGGGCCTATACTGGCATTTA

Fln Alignment:

G5KS2UX02JYEHE___LVNLRFIRVFLDSLTREEAEAGASGQRIVNFSNIGGYQGAFLAGTRPAWLMVCRERLRLHPQLCHGPILAF
Q7XWP1_______________LRNLRFHRVSIDITSREDIPT-LGRPRITTFNNVGGYEGLFLSGTRPAWVMVCRQRLRVHPQLCDGPIEAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain