SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64984

Length: 134 nt

UniGene Fasta

>sp_v3.0_unigene64984
AATGTAGAGTGACCGAGCTGCTCAAGGTTGGCAAGGACAAGCGTGCCCTCAAGCTCTGCAAGAGAAAGCTGGGCACCCACCTGAGGGCAAAGAGAAAGCGCGAGGAGATGGGCGAGCTGCTTCGTAAGGCCAAG

Ace file of the UniGene sp_v3.0_unigene64984

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L36 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RXF5_PHYPA	-	-	2.0e-11	81%
FL-Next	sp=60S ribosomal protein L36; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	60S ribosomal protein L36	-	-	0.0	-

Source	Gene names
Sma3	At2g37600; At3g53740; At5g02450; CHLREDRAFT_195597; F13M22.10; F5K20_40; GSVIVT00026857001; MICPUCDRAFT_31782; MICPUN_114038; OJ1281_H05.4; OSTLU_119615; Os01g0840700; Os05g0459900; OsI_04390; OsI_20226; OsJ_04027; OsJ_18810; Ot02g01800; P0408C03.28; PHYP

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L36e	IPR000509	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02450.1	Ribosomal protein L36e family protein chr5:533501-534394 FORWARD LENGTH=108	2.0e-17	79%
RefSeq	Arabidopsis thaliana	NP_195865.1	60S ribosomal protein L36-3 [Arabidopsis thaliana]	2.0e-17	79%
RefSeq	Populus trichocarpa	XP_002317423.1	predicted protein [Populus trichocarpa]	2.0e-17	79%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL37

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 44 - 110

Fln protein: CRVTELLKVGKDKRALKLCKRKLGTHLRAKRKREEMGELLRKAK

Protein Length: 45

Fln nts: AATGTAGAGTGACCGAGCTGCTCAAGGTTGGCAAGGACAAGCGTGCCCTCAAGCTCTGCAAGAGAAAGCTGGGCACCCACCTGAGGGCAAAGAGAAAGCGCGAGGAGATGGGCGAGCTGCTTCGTAAGGCCAAG

Fln Alignment:

G5KS2UX02FM2AP___RVTELLKVGKDKRALKLCKRKLGTHLRAKRKREEMGELLRKAK
A9NL37_______________RITELLKVGKDKRALKVAKKKLGTHKRAKKKREEMSNVLRKMR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain