SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64826

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene64826
TCTTGATGCTGAATTTGTTCGTTCCGAGGTTGCTCGAGGCCGCGCTATTATCCCTTCTAACAAGAAGCATCTGGAGTTGGAGCCCATGATTGTTGGGACGACATACTTGACATCTGTAATCAATATGATATTTCCCTTTCTATTGGAGATGGCTTGAGGCCCGGCTCTATTTATGATGCAAATGATGCTGCACAATTTGCAGAACTTGCTACTCAAGGCGAGCTCACTCGTCGTGCTTGGG

Ace file of the UniGene sp_v3.0_unigene64826

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=2 Tax=Malpighiales RepID=B9SHY3_RICCO	-	-	3.0e-21	88%
FL-Next	sp=Phosphomethylpyrimidine synthase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%
Sma3	Putative thiamin biosynthesis protein	-	-	1.248e-09	-

Source	Gene names
Sma3	At2g29630; CHLREDRAFT_196900; GSVIVT00024152001; LOC_Os03g47610; OSJNBa0067E01.3; Os03g0679700; OsI_13021; OsJ_12107; PHATRDRAFT_38085; PHYPADRAFT_153830; PHYPADRAFT_58059; POPTRDRAFT_172390; POPTRDRAFT_879767; RCOM_0611460; THAPSDRAFT_41733; THI1; THICb\|

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G29630.2	THIC thiaminC chr2:12667395-12669569 FORWARD LENGTH=644	2.0e-26	86%
RefSeq	Arabidopsis thaliana	NP_001189634.1	thiamine biosynthesis protein ThiC [Arabidopsis thaliana]	2.0e-26	86%
RefSeq	Populus trichocarpa	XP_002299825.1	predicted protein, partial [Populus trichocarpa]	2.0e-26	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82392

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 231 aas, your sequence is shorter than subject: 80 - 644

Fln protein: LDAEFVRSEVARGRAIIPSNKKHLELxxxxxxxxxxxxxxQYDISLSIGDGLRPGSIYDANDAAQFAELATQGELTRRAW

Protein Length: 81

Fln nts: TCTTGATGCTGAATTTGTTCGTTCCGAGGTTGCTCGAGGCCGCGCTATTATCCCTTCTAACAAGAAGCATCTGGAGTTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAATATGATATTTCCCTTTCTATTGGAGATGGCTTGAGGCCCGGCTCTATTTATGATGCAAATGATGCTGCACAATTTGCAGAACTTGCTACTCAAGGCGAGCTCACTCGTCGTGCTTGGG

Fln Alignment:

G5KS2UX02JLPFT___LDAEFVRSEVARGRAIIPSNKKHLELEPMIVGTTYLTSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHDCWDDILDICNQYDISLSIGDGLRPGSIYDANDAAQFAELATQGELTRRAW
O82392_______________LDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain