SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64768

Length: 263 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene64768
AGACTTAACAGTCTTTATGCCAAGCACACTGGGCAGAGCATTGAGAAGATTGAGAAATGCATGGANAGGGACATGTTCATGTCGCCTGAGGACGCTAAGGAGTTTGGGCTTGTGGATACAAGTCATTGAACAGAGGCCCATGTCTCTTGTTACTGATGCTGTGGGGGGTGCCTCTGTCGACAAGGAAACAAAGAGTTGAAGACGACAAGTAGCTTCTCTTCACCTCCCTTGAATTGGGTTTTGCTTTATGGGGTTTTGGTAGG

Ace file of the UniGene sp_v3.0_unigene64768 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NSF5_PICSI	-	-	3.0e-21	92%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	2.777e-11	-

Source	Gene names
Sma3	PHYPADRAFT_82283;

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23140.1	CLPP2, NCLPP7 nuclear-encoded CLP protease P7 chr5:7783811-7784826 FORWARD LENGTH=241	2.0e-11	55%
RefSeq	Arabidopsis thaliana	NP_568427.1	ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis thaliana]	3.0e-11	55%
RefSeq	Populus trichocarpa	XP_002306383.1	predicted protein [Populus trichocarpa]	2.0e-13	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSF5

Fln msg: Overlapping hits, possible frame ERROR between 120 and 98, your sequence is shorter than subject: 67 - 243

Fln protein: RLNSLYAKHTGQSIEKIEKCMDRDMFMSPEDAxxxxxxxxxVIEQRPMSLVTDAVGGASVDKETKS*

Protein Length: 68

Fln nts: AGACTTAACAGTCTTTATGCCAAGCACACTGGGCAGAGCATTGAGAAGATTGAGAAATGCATGGAtAGGGACATGTTCATGTCGCCTGAGGACGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCATTGAACAGAGGCCCATGTCTCTTGTTACTGATGCTGTGGGGGGTGCCTCTGTCGACAAGGAAACAAAGAGTTGAAGACGACAAGTAGCTTCTCTTCACCTCCCTTGAATTGGGTTTTGCTTTATGGGGTTTTGGTAGG

Fln Alignment:

G5KS2UX02HDKS4___RLNSLYAKHTGQSIEKIEKCMDRDMFMSPEDAxxxxxxxxVIEQRPMSLVTDAVGGASVDKETKS
A9NSF5_______________RLNSLYAKHTGQSIDKIEKCMERDMFMSPEEAxxxxxxxxVIEQRPMSLVTDAVGDASADNETKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain