SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64694

Length: 146 nt

UniGene Fasta

>sp_v3.0_unigene64694
AATGTCCTTGTAACTATGTATACACGGTCTGGAAGAATAGAGGCTGCAAGACAAGTGTTTGACAGAATCTATGAAAGAGATGTGGTGGTGTGGAGTTCAATGGTTACCGCATATTCTCAGAATGGGTATGCTAATGAGGCCTTGAA

Ace file of the UniGene sp_v3.0_unigene64694

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|P93011.1\|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760 gb\|AAC69141.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC08881.1\| pentatricopeptide repe	-	-	3.0e-07	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:8672774-8674881 FORWARD LENGTH=665	4.0e-12	52%
RefSeq	Arabidopsis thaliana	NP_189042.4	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-12	52%
RefSeq	Populus trichocarpa	XP_002308737.1	predicted protein [Populus trichocarpa]	1.0e-11	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 48 - 394

Fln protein: NVLVTMYTRSGRIEAARQVFDRIYERDVVVWSSMVTAYSQNGYANEAL

Protein Length: 49

Fln nts: AATGTCCTTGTAACTATGTATACACGGTCTGGAAGAATAGAGGCTGCAAGACAAGTGTTTGACAGAATCTATGAAAGAGATGTGGTGGTGTGGAGTTCAATGGTTACCGCATATTCTCAGAATGGGTATGCTAATGAGGCCTTGAA

Fln Alignment:

G5KS2UX02F0DQL___NVLVTMYTRSGRIEAARQVFDRIYERDVVVWSSMVTAYSQNGYANEAL
B8LKN6_______________NALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain