SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64683

Length: 120 nt

UniGene Fasta

>sp_v3.0_unigene64683
GATTGCATGAGTCGAGAATATTGCATCACGCCCAGGCTGGAGCACTATGCTTGTATGGTTAACCTTCTTGGCCGTGCTGGACGTTTAGATGAGGCAGAAATCTTAATTAATAATATGCCA

Ace file of the UniGene sp_v3.0_unigene64683

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LNU6.2\|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb\|AEE29953.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	9.0e-08	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At1g20230; GSVIVT00021011001; GSVIVT00027008001; GSVIVT00031640001; LOC_Os03g16450; OJ1529_G03.20; Os01g0819800; Os03g0271300; OsI_04228; OsI_10926; OsJ_10296; OsJ_19898; PCMP-H21; T20H2.1; VITISV_001911; VITISV_004914;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:7009570-7011852 FORWARD LENGTH=760	8.0e-12	73%
RefSeq	Arabidopsis thaliana	NP_173449.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-11	73%
RefSeq	Populus trichocarpa	XP_002322762.1	predicted protein [Populus trichocarpa]	1.0e-11	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 208 aas, your sequence is shorter than subject: 38 - 246

Fln protein: MSREYCITPRLEHYACMVNLLGRAGRLDEAEILINNMP

Protein Length: 39

Fln nts: GATTGC_-_ATGAGTCGAGAATATTGCATCACGCCCAGGCTGGAGCACTATGCTTGTATGGTTAACCTTCTTGGCCGTGCTGGACGTTTAGATGAGGCAGAAATCTTAATTAATAATATGCCA

Fln Alignment:

G5KS2UX02IL05G___MSREYCITPRLEHYACMVNLLGRAGRLDEAEILINNMP
D5AAE0_______________MCRDYCIAPREVHYACMIDLLGRAGRLDEARDFMKTIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain