SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64611

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene64611
AATGTCATACTATTGGCAAATATATATGCTGCTGCAGGTAGGTGGGATGATGTAGCTCATGTAAGAAAACTGATGAAAGATCGAGGAGTGAAAAAGGAACCTGGATTCAGCTGGATTGAAGTCAAGAATATAACGCATACATTTGTTGTAGGGGATACTTGGCACCCACAAAAGGAGGAGATCTATGCAATGCTGGAGGATTTGGCTGGCCAGATGAGGA

Ace file of the UniGene sp_v3.0_unigene64611

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide (PPR) repeat-containing protein-like protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6ZIP5_ORYSJ	-	-	3.0e-19	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Pentatricopeptide repeat protein	-	-	5.085e-25	-

Source	Gene names
Sma3	At1g25360; At2g27610; At4g02750; B1080A02.28; F10A12.28; F15K20.29; F4F7.25; GSVIVT00000680001; GSVIVT00000887001; GSVIVT00003060001; GSVIVT00006181001; GSVIVT00006945001; GSVIVT00008013001; GSVIVT00011403001; GSVIVT00014458001; GSVIVT00015531001; GSVIVT0

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Protein of unknown function DUF569	IPR007679	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	1.0e-24	57%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-24	57%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	1.0e-24	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH8

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 73 - 210

Fln protein: NVILLANIYAAAGRWDDVAHVRKLMKDRGVKKEPGFSWIEVKNITHTFVVGDTWHPQKEEIYAMLEDLAGQMR

Protein Length: 74

Fln nts: AATGTCATACTATTGGCAAATATATATGCTGCTGCAGGTAGGTGGGATGATGTAGCTCATGTAAGAAAACTGATGAAAGATCGAGGAGTGAAAAAGGAACCTGGATTCAGCTGGATTGAAGTCAAGAATATAACGCATACATTTGTTGTAGGGGATACTTGGCACCCACAAAAGGAGGAGATCTATGCAATGCTGGAGGATTTGGCTGGCCAGATGAGGA

Fln Alignment:

G5KS2UX02I7W4B___ILLANIYAAAGRWDDVAHVRKLMKDRGVKKEPGFSWIEVKNITHTFVVGDTWHPQKEEIYAMLEDLAGQMR
D5AAH8_______________VALSNIYSAAGRWDEAAKLRRLMNDRGVKKEPGYSWVQVKNMVHTFSVGDISHPQIEDIYAMLDKLAGQMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain