SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64518

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene64518
AATGTAACCTATGAGCCCTTCTGTTCTTATCAAGCGAAGTCAGCGTGGTTTGGGATGCTTATGAAGCAACCAAAGATGCTCATGGAGTGTGCATTTTAACAGAAGTTGGGACTGAGTTCAAGACTCTAGGACTTTCAGAAAATTCATGACAATATGCAGAAACCTGCAT

Ace file of the UniGene sp_v3.0_unigene64518

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose 6-dehydrogenase n=30 Tax=Magnoliophyta RepID=UGDH_SOYBN	-	-	3.0e-08	83%
FL-Next	sp=UDP-glucose 6-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	UDP-glucose dehydrogenase	-	-	1.149e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	UDP-glucose 6-dehydrogenase.	EC:1.1.1.22	-	1.061e-20	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	1.061e-20	%
Sma3	Ascorbate and aldarate metabolism	00053	1.061e-20	%
Sma3	Starch and sucrose metabolism	00500	1.061e-20	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	1.061e-20	%
Sma3	Metabolic pathways	01100	1.061e-20	%
Sma3	Biosynthesis of secondary metabolites	01110	1.061e-20	%

Source	Gene names
Sma3	LOC_Os03g55070; LOC_Os12g25690; LOC_Os12g25700; OSJNBa0040E01.8; Os03g0757900; Os12g0443500; Os12g0443600; OsI_13603; OsI_38224; OsI_38225; OsJ_12653; OsJ_35985; OsJ_35986; RCOM_1470440; RCOM_1621050; UDPGDH; UGDH; Ugdh; VITISV_020300;

Source	GOs	Term	Type	Identity
Sma3	UDP-glucose 6-dehydrogenase activity	GO:0003979	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	-
Sma3		IPR014028	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar dehydrogenase	IPR017476	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ50

Fln msg: Separated hits, possible frame ERROR between 128 and 130, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 39 aas, your sequence is shorter than subject: 56 - 480

Fln protein: CNL*ALLFLSSEVSVVWDAYEATKDAHGVCILTEVGTEFKTxxDFQKIHDNMQKPA

Protein Length: 57

Fln nts: AATGTAACCTATGAGCCCTTCTGTTCTTATCAAGCGAAGTCAGCGTGGTTTGGGATGCTTATGAAGCAACCAAAGATGCTCATGGAGTGTGCATTTTAACAGAAGTTGGGACTGAGTTCAAGACTCTxxxGGACTTTCAGAAAATTCATGACAATATGCAGAAACCTGCAT

Fln Alignment:

G5KS2UX02JXPAF___EVSVVWDAYEATKDAHGVCILTEVGTEFKTLxDFQKIHDNMQKPA
B8LQ50_______________QVSVVWDAYEATKDAHGVCILTE-WDEFKTLxDYQKIHDNMQKPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain