SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64468

Length: 196 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene64468
GAGTGGTTAGCGATGCCCTTTGGACTCATTAATGCATCTATCACATTCATGAGATTGATGAATGAAGTCTTGAAGGAATATGCAGGCAAGTTTGTTATTGTTTATCTTGATGATATTCTAGTTTTTAGTAGAAGTAAAGAAGAAAATATAGAGCATCTTAAAAAAAAATTAAGAACACTACAAAGAGAAACACATT

Ace file of the UniGene sp_v3.0_unigene64468 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein, identical [Solanum demissum]	-	-	7.0e-16	58%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	54%
Sma3	Gag-Pol polyprotein	-	-	8.846e-14	-

Source	Gene names
Sma3	AT4g08100; At2g06890; F9M13.15; H0211A12.9; LOC_Os03g35326; LOC_Os10g16560; LOC_Os10g20440; LOC_Os10g20960; LOC_Os11g21960; LOC_Os11g23970; LOC_Os12g15350; LOC_Os12g19810; LOC_Os12g22610; LOC_Os12g26500; MtrDRAFT_AC158464g34v2; OJ1122_B08.16; OSJNAb0078C1

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 65 - 142

Fln protein: EWLAMPFGLINASITFMRLMNEVLKEYAGKFVIVYLDDILVFSRSKEENIEHLKKKLRTLQRETH

Protein Length: 66

Fln nts: GAGTGGTTAGCGATGCCCTTTGGACTCATTAATGCATCTATCACATTCATGAGATTGATGAATGAAGTCTTGAAGGAATATGCAGGCAAGTTTGTTATTGTTTATCTTGATGATATTCTAGTTTTTAGTAGAAGTAAAGAAGAAAATATAGAGCATCTTAAAAAAAAATTAAGAACACTACAAAGAGAAACACATT

Fln Alignment:

G5KS2UX02IRJ7D___EWLAMPFGLINASITFMRLMNEVLKEYAGKFVIVYLDDILV---FSRSKEENIEHLK
P31843_______________EFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain