SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64425

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene64425
TCTCTGCCAAGAAGGGCGGTTGGCTCAAGCAATCGATGTCCTGGAGGAGATGCCGAGGAAGGGGCTTACTCCTGATGCCTTGAGTTTACAACCCAATCATCGATACATTTTGCAAGGAAGGAAGGATGGATCAAGCAATCGAGTACCTAGATAAAATGGTATCCAGAGGAGGCCTTCCTGACATAGTGACATATAATACAATGC

Ace file of the UniGene sp_v3.0_unigene64425

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q3EDF8.1\|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900 gb\|AEE28512.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	4.0e-15	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Pentatricopeptide repeat-containing protein At1g09900	-	-	7.31e-06	-

Source	Gene names
Sma3	At1g09900; F21M12.38; POPTRDRAFT_754830; VITISV_026694;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09900.1	Pentatricopeptide repeat (PPR-like) superfamily protein chr1:3218133-3219929 FORWARD LENGTH=598	3.0e-17	71%
RefSeq	Arabidopsis thaliana	NP_172461.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-17	71%
RefSeq	Populus trichocarpa	XP_002302359.1	predicted protein [Populus trichocarpa]	1.0e-16	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 252 aas, your sequence is shorter than subject: 51 - 420

Fln protein: LCQEGRLAQAIDVLEEMPRKGLTPDALSLQPNHRYILQGRKDGSSNRVPR*

Protein Length: 52

Fln nts: TCTCTGCCAAGAAGGGCGGTTGGCTCAAGCAATCGATGTCCTGGAGGAGATGCCGAGGAAGGGGCTTACTCCTGATGCCTTGAGTTTACAACCCAATCATCGATACATTTTGCAAGGAAGGAAGGATGGATCAAGCAATCGAGTACCTAGATAAAATGGTATCCAGAGGAGGCCTTCCTGACATAGTGACATATAATACAATGC

Fln Alignment:

G5KS2UX02GWAG4___LCQEGRLAQAIDVLEEMPRKGLTPDALS
B8LN20_______________LCKKGQIAEAMEIFREMEEKGSAPDSFT

SSRs (tot: 1)

Start position	End position	Sequence	Length
114	126	AAGG AAGG AAGG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain