SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64389

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene64389
AATGTATTTGGACTAACCAACGCACCGACCACCTTTATGAGATTCATTAATGATGTTTTCAGGGCACATTTGGGTAAGTTTGTGGTCATCTACTTTGATGACATTTTAGTATTCAGTAAATCTTGGGAAGACCATCTTCAGCGTGTTCGCACCATACTTGAGTTATTGCGAGCACATCACCTTCAGGTCAAAGAAAGAAATCCTATTTTGGACAAACATCAGTTCAAT

Ace file of the UniGene sp_v3.0_unigene64389

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60ET2_ORYSJ	-	-	2.0e-15	62%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	41%
Sma3	Gag-Pol polyprotein	-	-	6.391e-11	-

Source	Gene names
Sma3	AT4g03840; AT4g04230; At2g06470; At2g07660; H0211A12.9; LOC_Os03g35326; OJ1122_B08.16; OSIGBa0093M15.6; OSJNBa0003M24.1; OSJNBa0024J22.19; OSJNBa0032B23.3; OSJNBa0038J12.13; T27D20.2; T7M24.4; VITISV_040537; gag-pol;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 76 - 142

Fln protein: NVFGLTNAPTTFMRFINDVFRAHLGKFVVIYFDDILVFSKSWEDHLQRVRTILELLRAHHLQVKERNPILDKHQFN

Protein Length: 77

Fln nts: AATGTATTTGGACTAACCAACGCACCGACCACCTTTATGAGATTCATTAATGATGTTTTCAGGGCACATTTGGGTAAGTTTGTGGTCATCTACTTTGATGACATTTTAGTATTCAGTAAATCTTGGGAAGACCATCTTCAGCGTGTTCGCACCATACTTGAGTTATTGCGAGCACATCACCTTCAGGTCAAAGAAAGAAATCCTATTTTGGACAAACATCAGTTCAAT

Fln Alignment:

G5KS2UX02IB6OA___FGLTNAPTTFMRFINDVFRAHLGKFVVIYFDDILV---FSKSWEDHLQRVRTILE
P31843_______________FGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLRVVRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain