SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64369

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene64369
AATGTTCCATAGCTATGCAATAAGAAGTGGATTTGAATCTGATGTTGTTGTTGGCAACGCACTTGTGGACATGTATGCCAAATGTGGGAATGCTAACATTGCCCACGAGTTGTTTGAAAGAATGGCTGAACGAAATGTTGTGTCATGGAATGCAATCATTGCTGGTTATTGTCAGAATAGCCAACCCCATGAAACCTTGGCATTCTTCAACAAAATGCAAGCTCAAGGGACAAAGCCC

Ace file of the UniGene sp_v3.0_unigene64369

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q3E6Q1.1\|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290 gb\|AEE28713.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	4.0e-18	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	At1g11290; GSVIVT00002423001; GSVIVT00028372001; PCMP-H40; PCMP-H72; RCOM_0901150; RCOM_1445420; T28P6.20;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	mRNA modification	GO:0016556	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11290.1	CRR22 Pentatricopeptide repeat (PPR) superfamily protein chr1:3791454-3793883 REVERSE LENGTH=809	4.0e-23	55%
RefSeq	Arabidopsis thaliana	NP_172596.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-23	55%
RefSeq	Populus trichocarpa	XP_002299253.1	predicted protein [Populus trichocarpa]	2.0e-20	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 79 - 795

Fln protein: MFHSYAIRSGFESDVVVGNALVDMYAKCGNANIAHELFERMAERNVVSWNAIIAGYCQNSQPHETLAFFNKMQAQGTKP

Protein Length: 80

Fln nts: AATGTTCCATAGCTATGCAATAAGAAGTGGATTTGAATCTGATGTTGTTGTTGGCAACGCACTTGTGGACATGTATGCCAAATGTGGGAATGCTAACATTGCCCACGAGTTGTTTGAAAGAATGGCTGAACGAAATGTTGTGTCATGGAATGCAATCATTGCTGGTTATTGTCAGAATAGCCAACCCCATGAAACCTTGGCATTCTTCAACAAAATGCAAGCTCAAGGGACAAAGCCC

Fln Alignment:

G5KS2UX02J0AZH___HSYAIRSGFESDVVVGNALVDMYAKCGNANIAHELFERMAERNVVSWNAIIAGYCQNSQPHETLAFFNKMQAQGTKP
B8LQA8_______________HGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain