SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64341

Length: 116 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene64341
AAGGGATGCAAGCTGTAATGGCCAGCGACTTTGCAATTTCTCAATTCAGATTCCTGACAGAGCTCCTTCTTGTCCATGGAAGACTGTCATATATTCGGATTTCAAAGGTGGTAACC

Ace file of the UniGene sp_v3.0_unigene64341 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipid-transporting ATPase 3 [Arabidopsis thaliana] sp\|Q9XIE6.2\|ALA3_ARATH RecName: Full=Phospholipid-transporting ATPase 3; Short=AtALA3; AltName: Full=Aminophospholipid ATPase 3; AltName: Full=Aminophospholipid flippase 3; AltName: Full=Protein IR	-	-	1.0e-09	86%
FL-Next	sp=Phospholipid-transporting ATPase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%
Sma3	Phospholipid-transporting ATPase, putative	-	-	1.925e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	1.432e-12	-

Source	Gene names
Sma3	ALA2; ALA3; ALA8; At1g59820; At3g27870; CHLREDRAFT_190292; F23H11.14; GSVIVT00009008001; GSVIVT00020729001; K16N12.9; LOC_Os10g27220; MICPUCDRAFT_35603; MICPUN_84330; OSJNBb0011E04.123; OSTLU_49740; Os06g0488600; Os10g0412000; OsI_23030; OsI_29061; OsI_33

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-
Sma3	Golgi vesicle budding	GO:0048194	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59820.1	ALA3 aminophospholipid ATPase 3 chr1:22011599-22020023 FORWARD LENGTH=1213	5.0e-14	86%
RefSeq	Arabidopsis thaliana	NP_176191.1	phospholipid-transporting ATPase 3 [Arabidopsis thaliana]	6.0e-14	86%
RefSeq	Populus trichocarpa	XP_002339708.1	predicted protein, partial [Populus trichocarpa]	7.0e-16	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XIE6

Fln msg: Distance to subject end: 309 aas, your sequence is shorter than subject: 38 - 1213

Fln protein: GMQAVMASDFAISQFRFLTELLLVHGRLSYIRISKVVT

Protein Length: 39

Fln nts: AAGGGATGCAAGCTGTAATGGCCAGCGACTTTGCAATTTCTCAATTCAGATTCCTGACAGAGCTCCTTCTTGTCCATGGAAGACTGTCATATATTCGGATTTCAAAGGTGGTAACC

Fln Alignment:

G5KS2UX02GA9D8___GMQAVMASDFAISQFRFLTELLLVHGRLSYIRISKVV
Q9XIE6_______________GMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain