SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64310

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene64310
AATGTTAGAAATCAAATCTCAATCAGCACATTAGGGCAGTGCACCTTGGATTAAGACCATTTAAGTGTAGATTTCATGAATGTGAAATGAGTTTCGCACACAAGGCTGTGAGAGACAATCATGAGAAGACAGGAAGGCATTGCTATGTACAAGTGAGTCTAGCAAA

Ace file of the UniGene sp_v3.0_unigene64310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG5048 FOG: Zn-finger	-	-	6.0e-05	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%

Source	Gene names
Sma3	GSVIVT00023363001;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327353.1	predicted protein, partial [Populus trichocarpa]	3.0e-15	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TQ66

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 56 aas, your sequence is shorter than subject: 54 - 390

Fln protein: C*KSNLNQHIRAVHLGLRPFKCRFHECEMSFAHKAVRDNHEKTGRHCYVQVSLA

Protein Length: 55

Fln nts: AATGTTAGAAATCAAATCTCAATCAGCACATTAGGGCAGTGCACCTTGGATTAAGACCATTTAAGTGTAGATTTCATGAATGTGAAATGAGTTTCGCACACAAGGCTGTGAGAGACAATCATGAGAAGACAGGAAGGCATTGCTATGTACAAGTGAGTCTAGCAAA

Fln Alignment:

G5KS2UX02F83DF___KSNLNQHIRAVHLGLRPFKCRFHECEMSFAHKAVRDNHEKTGRHCY
D7TQ66_______________KSNLDQHVKAVHLKLRPFVCGIPGCGMRFPFKHVRDNHEKTGCHVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain