SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64247

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene64247
AATGTCTTTGATCTGCAACAGAGGATTGTACTTGGGGACCTCCATACTCCATTTGTGAAATACATTGTTGCGGGTTACTAAAGGAATTTTTGAGGGTGGATTGGATAATGTTGGGGGTGCAGTGCATGAGGAAGAGGATGAAGGAGCTGCAGCCAATTGGGGTGAAGATCTTGACATTGCTGAA

Ace file of the UniGene sp_v3.0_unigene64247

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COP alpha homolog (Fragment) n=1 Tax=Triticum aestivum RepID=Q9FVJ9_WHEAT	-	-	8.0e-06	65%
FL-Next	sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	63%

Source	Gene names
Sma3	GSVIVT00014508001;

Source	GOs	Term	Type	Identity
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0J3D9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 368 aas, your sequence is shorter than subject: 61 - 1218

Fln protein: MSLICNRGLYLGTSILHL*NTLLRVTKGIFEGGLDNVGGAVHEEEDEGAAANWGEDLDIAE

Protein Length: 62

Fln nts: AATGTCTTTGATCTGCAACAGAGGATTGTACTTGGGGACCTCCATACTCCATTTGTGAAATACATTGTTGCGGGTTACTAAAGGAATTTTTGAGGGTGGATTGGATAATGTTGGGGGTGCAGTGCATGAGGAAGAGGATGAAGGAGCTGCAGCCAATTGGGGTGAAGATCTTGACATTGCTGAA

Fln Alignment:

G5KS2UX02IBAI8___LLRVTKGIFEGGLDNVGGAVHEEEDEGAAANWG-EDLDIAE
Q0J3D9_______________LLRVMRGIFEGGLDATGKAELEEDDEAAGADWGDEDLDMVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain