SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64243

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene64243
AATGTGTTCTGGACTCTGGTGATGGTGTCACCCACACAATTCCAATACATGAAGGGTATGTTCTTCCTCATGTCCTCGGGTTAGATGTTGCTGGTCGGGATTTAACAGATGCAATGATGAAGATGCTGACTGAGCGAGGCTACTCATTCACCACTGCTGCAGAGCGTGAAATTGTTGGTGATATGAAAGAGAAGGTTGCTTATGTAGC

Ace file of the UniGene sp_v3.0_unigene64243

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin-like protein (Fragment) n=3 Tax=Bauhinia RepID=D5K102_9FABA	-	-	7.0e-24	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Actin	-	-	1.825e-14	-

Source	Gene names
Sma3	AC1; AC100; AC101; AC2; AC97; ACT; ACT-1; ACT1; ACT11; ACT12; ACT13; ACT14; ACT2; ACT3; ACT4; ACT5; ACT6; ACT7; ACT8; ACT9; ACTA; ACTB; Ac2; Act; Act1; Act2; Act3; Act5; Act7; ActA; ApAct2; At3g12110/T21B14_108; At5g59370; BA-AC; CSACT1; CSACT2; Cyc3; GSV

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin, conserved site	IPR004001	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53750.1	ACT3 actin 3 chr3:19915924-19917371 FORWARD LENGTH=377	3.0e-30	76%
RefSeq	Arabidopsis thaliana	NP_566988.1	actin 3 [Arabidopsis thaliana]	4.0e-30	76%
RefSeq	Populus trichocarpa	XP_002322664.1	actin 7 [Populus trichocarpa]	3.0e-31	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYV3

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 68 - 377

Fln protein: CVLDSGDGVTHTIPIHEGYVLPHVLGLDVAGRDLTDAMMKMLTERGYSFTTAAEREIVGDMKEKVAYV

Protein Length: 69

Fln nts: AATGTGTTCTGGACTCTGGTGATGGTGTCACCCACACAATTCCAATACATGAAGGGTATGTTCTTCCTCATGTCCTCGGGTTAGATGTTGCTGGTCGGGATTTAACAGATGCAATGATGAAGATGCTGACTGAGCGAGGCTACTCATTCACCACTGCTGCAGAGCGTGAAATTGTTGGTGATATGAAAGAGAAGGTTGCTTATGTAGC

Fln Alignment:

G5KS2UX02I72JI___VLDSGDGVTHTIPIHEGYVLPH-VLGLDVAGRDLTDAMMKMLTERGYSFTTAAEREIVGDMKEKVAYV
A9NYV3_______________VLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain