SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64098

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene64098
AATGTATTATTCCCAGCAGCACTGGGGCTGCTAAGGCTGTTGGAAAGGTTCTTCCACAACTTAATGGCAAATTGACTGGAATGGCTTTCCGTGTTCCAACTGTTGATGTTTCAGTCGTTGACCTCACTGTCAGGCTTGAGAAGAAGGCCTCCTATGAGGAGATCAAAAAAGCTATCAAGGAGGAGTCCGAGGGCAAGCTTAAGGGTATCTTGGGATACACTGAAGATGATGTGGTGTCTACC

Ace file of the UniGene sp_v3.0_unigene64098

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glyceradehyde-3-phosphate dehydrogenase (Fragment) n=2 Tax=rosids RepID=D7UNZ6_BRARC	-	-	8.0e-22	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	AT1G13440; At1g13440; At3g04120; G3PDH; G3pdh; GAPC; GAPC1; GAPDH; GapC; GapC-2; GapC-3; Gapc1; Gapc2; HcGAPDH; RCOM_1507100; RCOM_2049270; T6J4.17; T6K12.26; g3pdh; gapC; gapC2; gapdh;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial envelope	GO:0005740	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000173	-	0.0	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04120.1	GAPC, GAPC-1, GAPC1 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 chr3:1081077-1083131 FORWARD LENGTH=338	7.0e-28	93%
RefSeq	Arabidopsis thaliana	NP_187062.1	glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana]	9.0e-28	93%
RefSeq	Populus trichocarpa	XP_002298594.1	predicted protein [Populus trichocarpa]	6.0e-28	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTQ1

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 80 - 340

Fln protein: CIIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTVDVSVVDLTVRLEKKASYEEIKKAIKEESEGKLKGILGYTEDDVVST

Protein Length: 81

Fln nts: AATGTATTATTCCCAGCAGCACTGGGGCTGCTAAGGCTGTTGGAAAGGTTCTTCCACAACTTAATGGCAAATTGACTGGAATGGCTTTCCGTGTTCCAACTGTTGATGTTTCAGTCGTTGACCTCACTGTCAGGCTTGAGAAGAAGGCCTCCTATGAGGAGATCAAAAAAGCTATCAAGGAGGAGTCCGAGGGCAAGCTTAAGGGTATCTTGGGATACACTGAAGATGATGTGGTGTCTACC

Fln Alignment:

G5KS2UX02F9VL9___IIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTVDVSVVDLTVRLXXXXXXXXXXXXXXXXXXXXLKGILGYTEDDVVST
A9NTQ1_______________IIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTADVSVVDLTVRLEKSATYDEIKAAIKEESEGKLKGILGYTEDAVVST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain