SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63988

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene63988
AATGTATGGACCGGTATTCCCATATCCAAACTTTTCTAGCAGTCTGAGAAAGAGAAGCTTTTGAAGTTGGATGTAGAATTGCATAAGCGTGTCATTGGTCAAGATCCAGCTGTGAAATCTGTAGCTGAAGCCATCCAGCGATCTAGGGCGGTCTCTCAGATCCTAATCGTCCTATTGCAAGC

Ace file of the UniGene sp_v3.0_unigene63988

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0542 ATPases with chaperone activity, ATP-binding subunit	-	-	4.0e-07	58%
FL-Next	sp=Chaperone protein ClpB2, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	77%
Sma3	Chaperone, Hsp100 family, clpb-type	-	-	3.104e-08	-

Source	Gene names
Sma3	At2g25140; At5g15450; CHLREDRAFT_195422; CLPB1; CLPB2; CLPB3; GSVIVT00021042001; GSVIVT00032702001; HSP101; LOC_Os03g31300; Lehsp100/ClpB; MICPUCDRAFT_56397; MICPUCDRAFT_65129; MICPUN_57068; MICPUN_78285; OSJNBa0020H02.1; OSJNBa0083F15.25; OSTLU_24612; OS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q75GT3

Fln msg: Overlapping hits, possible frame ERROR between 150 and 150, Distance to subject end: 291 aas, your sequence is shorter than subject: 61 - 978

Fln protein: NVWTGIPISKLF*QSEKEKLLKLDVELHKRVIGQDPAVKSVAEAIQRSRxxLSDPNRPIAS

Protein Length: 62

Fln nts: AATGTATGGACCGGTATTCCCATATCCAAACTTTTCTAGCAGTCTGAGAAAGAGAAGCTTTTGAAGTTGGATGTAGAATTGCATAAGCGTGTCATTGGTCAAGATCCAGCTGTGAAATCTGTAGCTGAAGCCATCCAGCGATCTAGGxxxxxxCTCTCAGATCCTAATCGTCCTATTGCAAGC

Fln Alignment:

G5KS2UX02H1H5E___WTGIPISKLF*QSXXXXXXXXXXXXXXRVIGQDPAVKSVAEAIQRSRAGLSDPNRPIAS
Q75GT3_______________WTGIPVSKLK-QSDREKLLYLEEELHKRVVGQDPAVKAVSEAIQRSRAGLSDPNRPIAS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain