SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63956

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene63956
AATGTAAGAAAATTCTCAATGGAATTACAGGGTATGTGGCATCAAAGCAAATTCTGGCTTTGATGGGGCCTTCAGGCAGTGGTAAAACGACCCTACTCAAAATTATTGGAGGAAGAATTCAAGGGAAGTTGACTGGTTCTTTAACATATAACGGGGTTCCTTACAGCAATGCCCTAAAGAGAAGGATAGGATTTGTAACACAAGAGGACATACTTTATGATAAGTTAACAGTTTATGAAAC

Ace file of the UniGene sp_v3.0_unigene63956

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9S9X8_RICCO	-	-	2.0e-23	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	White-brown-complex ABC transporter family	-	-	1.637e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Molybdate-transporting ATPase.	EC:3.6.3.29	-	1.236e-07	-

Source	Gene names
Sma3	At1g31770; At3g13220; At3g52310; At4g27420; At5g06530; F27G19.20; F27M3.2; F5M6.22; GSVIVT00001167001; GSVIVT00002251001; GSVIVT00027138001; GSVIVT00027624001; GSVIVT00030260001; GSVIVT00031837001; GSVIVT00033423001; LOC_Os03g06139; MJG19.19; OJ1449_C01.5

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13220.1	WBC27, ABCG26 ABC-2 type transporter family protein chr3:4247968-4250703 REVERSE LENGTH=685	7.0e-27	65%
RefSeq	Arabidopsis thaliana	NP_187928.2	ABC-2 type transporter family protein [Arabidopsis thaliana]	9.0e-27	65%
RefSeq	Populus trichocarpa	XP_002328852.1	white-brown-complex ABC transporter family, partial [Populus trichocarpa]	5.0e-28	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Distance to subject end: 512 aas, your sequence is shorter than subject: 79 - 819

Fln protein: CKKILNGITGYVASKQILALMGPSGSGKTTLLKIIGGRIQGKLTGSLTYNGVPYSNALKRRIGFVTQEDILYDKLTVYE

Protein Length: 80

Fln nts: AATGTAAGAAAATTCTCAATGGAATTACAGGGTATGTGGCATCAAAGCAAATTCTGGCTTTGATGGGGCCTTCAGGCAGTGGTAAAACGACCCTACTCAAAATTATTGGAGGAAGAATTCAAGGGAAGTTGACTGGTTCTTTAACATATAACGGGGTTCCTTACAGCAATGCCCTAAAGAGAAGGATAGGATTTGTAACACAAGAGGACATACTTTATGATAAGTTAACAGTTTATGAAAC

Fln Alignment:

G5KS2UX02F51PG___KKILNGITGYVASKQILALMGPSGSGKTTLLKIIGGRIQGKLTGSLTYNGVPYSNALKRRIGFVTQEDILYDKLTVYE
B8LNF9_______________KDILYGVSGSIAPGEMLAMMGPSGSGKTTLINLLGGRIQQNVSGSITYNDQPYSKALKRRIGFVTQDDVLFPHLTVRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain