SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63937

Length: 194 nt

UniGene Fasta

>sp_v3.0_unigene63937
AATGTAAATGAAAAACCGTAGGAAGACTGCTGATGGGTTTCAAAGATGGATGATGAAAGCAGCAAACAATGGTGCTGCTGCATTTGGTGAAGTAGACGCAAAAAGGGTGATGATGATGATGATGATACTGTTGTTTCTGACAGAGGAGAGGAGGATGAGGATGAAGAAGAGGCGAAGAAAAAGTGGCTCGGTAC

Ace file of the UniGene sp_v3.0_unigene63937

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription initiation factor IIF subunit alpha n=5 Tax=Arabidopsis RepID=T2FA_ARATH	-	-	3.0e-08	81%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	81%
Sma3	Transcription Factor IIF, Rap30/Rap74, interaction	-	-	1.426e-09	-

Source	Gene names
Sma3	At4g12610; GSVIVT00008406001; MtrDRAFT_AC150798g17v2; MtrDRAFT_AC150798g21v2; POPTRDRAFT_1080142; POPTRDRAFT_254823; RAP74; RCOM_0722120; RCOM_1299530; T1P17.200; TF2Falpha; VITISV_003680;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Transcription initiation factor IIF, alpha subunit	IPR008851	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G12610.2	-	2.0e-12	81%
RefSeq	Arabidopsis thaliana	NP_192998.3	transcription initiation factor IIF subunit alpha [Arabidopsis thaliana]	2.0e-12	81%
RefSeq	Populus trichocarpa	XP_002322538.1	predicted protein, partial [Populus trichocarpa]	2.0e-12	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SU25-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 304 aas, your sequence is shorter than subject: 64 - 543

Fln protein: M*MKNRRKTADGFQRWMMKAANNGAAAFGEVDAKRVMMMMMILLFLTEERRMRMKKRRRKSGSV

Protein Length: 65

Fln nts: AATGTAAATGAAAAACCGTAGGAAGACTGCTGATGGGTTTCAAAGATGGATGATGAAAGCAGCAAACAATGGTGCTGCTGCATTTGGTGAAGTAGACGCAAAAAGGGTGATGATGATGATGATGATACTGTTGTTTCTGACAGAGGAGAGGAGGATGAGGATGAAGAAGAGGCGAAGAAAAAGTGGCTCGGTAC

Fln Alignment:

G5KS2UX02JB0H6___MKNRRKTADGFQRWMMKAANNGAAAFGEVDAKR
Q9SU25-2_____________MKNRRKTADGYQRWMMKAANNGPALFGEVDNEK

SSRs (tot: 1)

Start position	End position	Sequence	Length
108	126	TGA TGA TGA TGA TGA TGA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain