SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63915

Length: 199 nt

UniGene Fasta

>sp_v3.0_unigene63915
AATGTTTGCAGGTCAGGCATAACAAAGCTATTTCTAAGGACACATGGTCTCAACTGTTGGAATTCGCAAAGATGGTAGACCCCTCATTGTCCAATTATGATGCAGAAGGTGCATGGCCGTATCTTATTGATGAGTTTGTTGAGTACTTGGGGTATGCCTTGGCACACTCGTTCACCTCGTTTATCACCTGAGATGCCTC

Ace file of the UniGene sp_v3.0_unigene63915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF298 domain containing protein	-	-	3.0e-23	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	DCN1-like protein 2	-	-	6.056e-10	-

Source	Gene names
Sma3	At3g12760; DCN1; GSVIVT00002077001; Os06g0233400; OsI_22278; OsJ_20715; P0479H10.34; POPTRDRAFT_814035; RCOM_1130690; VITISV_038771;

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Potentiating neddylation domain	IPR005176	-	-
Sma3	Defective-in-cullin neddylation protein	IPR014764	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12760.1	" CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (D	6.0e-25	89%
RefSeq	Arabidopsis thaliana	NP_566436.1	uncharacterized protein [Arabidopsis thaliana]	7.0e-25	89%
RefSeq	Populus trichocarpa	XP_002311289.1	predicted protein [Populus trichocarpa]	1.0e-24	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS3

Fln msg: your sequence is shorter than subject: 63 - 251

Fln protein: CLQVRHNKAISKDTWSQLLEFAKMVDPSLSNYDAEGAWPYLIDEFVEYLGYALAHSFTSFIT*

Protein Length: 64

Fln nts: AATGTTTGCAGGTCAGGCATAACAAAGCTATTTCTAAGGACACATGGTCTCAACTGTTGGAATTCGCAAAGATGGTAGACCCCTCATTGTCCAATTATGATGCAGAAGGTGCATGGCCGTATCTTATTGATGAGTTTGTTGAGTACTTGGGGTATGCCTTGGCACACTCGTTCACCTCGTTTATCACCTGA___GATGCCTC

Fln Alignment:

G5KS2UX02FYIDR___LQVRHNKAISKDTWSQLLEFAKMVDPSLSNYDAEGAWPYLIDEFVEYL
A9NVS3_______________LQARHNKAISKDTWSQLLEFAKMVDPSLSNYDAEGAWPYLIDEFVEYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain