SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63908

Length: 366 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene63908
GTGGCAATGCATCATTCCTGGCAAATCTGGGACGGATTGGGAGGGTGGTTACTTTCCTCTAACAATTCATTTCAGTGAGGATTACCCAAGTAAACCTCCAAATGCAAGTCCCTCAAGGGTTTTTTCATCCCAATGTTTACCCATCAGGAACTGTTTGTCTCTCTATCCTTAATGAGGACTCTGGGTGGCGGCCAGCCATTACTGTGAAGCAAATTCTGATTGGTATTCAAGACCTTTTAGATCAACCAAATCCATCTGATCCGGCACAAACAGATGCCTACCAACTTTTTATCCAAGATCCCCCAGAATACAAACGAAGAGTTCGACAGCAGGCAAAACAATATCCACCTCCGGTGTGATGACATT

Ace file of the UniGene sp_v3.0_unigene63908 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=2 Tax=Picea RepID=A9NRG7_PICSI	-	-	3.00018e-42	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Ubiquitin carrier protein	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	8.40779e-45	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		8.40779e-45	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		8.40779e-45	%

Source	Gene names
Sma3	10D10; Ahus5; At3g57870; CHLREDRAFT_135149; CHLREDRAFT_57440; GSVIVT00014866001; GSVIVT00019543001; LOC_Os03g03130; LOC_Os10g39120; MICPUCDRAFT_14889; MICPUCDRAFT_49619; MICPUN_63982; MICPUN_93648; MICPUN_97341; OJ1126B12.12; OSJNBa0064M23.9; OSJNBb0060I0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	SUMO ligase activity	GO:0019789	Molecular Function	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	protein sumoylation	GO:0016925	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57870.1	AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 sumo conjugation enzyme 1 chr3:21428831-21430110 REVERSE LENGTH=160	1.4013e-45	84%
RefSeq	Arabidopsis thaliana	NP_191346.1	SUMO-conjugating enzyme SCE1 [Arabidopsis thaliana]	1.4013e-45	84%
RefSeq	Populus trichocarpa	XP_002336358.1	predicted protein [Populus trichocarpa]	0.0	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRG7

Fln msg: Overlapping hits, possible frame ERROR between 163 and 111, your sequence is shorter than subject: 120 - 160

Fln protein: WQCIIPGKSGTDWEGGYFPLTIHFSEDYPSKPPNASxxxxxxxxxxxxxxxxxxxILNEDSGWRPAITVKQILIGIQDLLDQPNPSDPAQTDAYQLFIQDPPEYKRRVRQQAKQYPPPV*

Protein Length: 121

Fln nts: GTGGCAATGCATCATTCCTGGCAAATCTGGGACGGATTGGGAGGGTGGTTACTTTCCTCTAACAATTCATTTCAGTGAGGATTACCCAAGTAAACCTCCAAATGCAAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCCTTAATGAGGACTCTGGGTGGCGGCCAGCCATTACTGTGAAGCAAATTCTGATTGGTATTCAAGACCTTTTAGATCAACCAAATCCATCTGATCCGGCACAAACAGATGCCTACCAACTTTTTATCCAAGATCCCCCAGAATACAAACGAAGAGTTCGACAGCAGGCAAAACAATATCCACCTCCGGTGTGATGACATT

Fln Alignment:

G5KS2UX02HPCK8___WQCIIPGKSGTDWEGGYFPLTIHFSEDYPSKPPNAS-xxxxxxxxxxxxxxxxxxxLNEDSGWRPAITVKQILIGIQDLLDQPNPSDPAQTDAYQLFIQDPPEYKRRVRQQAKQYPPPV
A9NRG7_______________WQCILPGKPGTDWEGGYFPLTIHFSEDYPSKPPKCKFxxxxxxxxxxxxxxxxxxxLNEDSGWRPAITVKQILIGIQDLLDQPNPSDPAQTDAYQLFIQDPPEYKRRVRQQAKQYPPPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain