SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63848

Length: 160 nt

UniGene Fasta

>sp_v3.0_unigene63848
AATGTAATGCAATTGACAGGGATGAAGCCTAGATCATATCACCTTCGCTTCTGTTTTATGTGCCTGCTGTCATGCAGGCTTGGTGGATGATGGCTGGCGACTTTTTGAATCCATGAGTCAAGAGTATGGCATCATACCTAGGTTGGATCATTATACAAGC

Ace file of the UniGene sp_v3.0_unigene63848

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR-repeat protein-like n=3 Tax=Oryza sativa RepID=Q94E87_ORYSJ	-	-	3.0e-09	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09950.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:3102877-3105864 REVERSE LENGTH=995	3.0e-12	54%
RefSeq	Arabidopsis thaliana	NP_196557.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-12	54%
RefSeq	Populus trichocarpa	XP_002330643.1	predicted protein [Populus trichocarpa]	1.0e-12	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 230 aas, your sequence is shorter than subject: 53 - 795

Fln protein: M*CN*QG*SLDHITFASVLCACCHAGLVDDGWRLFESMSQEYGIIPRLDHYTS

Protein Length: 54

Fln nts: AATGTAATGCAATTGACAGGGATGAAGCCTAGATCATATCACCTTCGCTTCTGTTTTATGTGCCTGCTGTCATGCAGGCTTGGTGGATGATGGCTGGCGACTTTTTGAATCCATGAGTCAAGAGTATGGCATCATACCTAGGTTGGATCATTATACAAGC

Fln Alignment:

G5KS2UX02JNGDQ___G*SLDHITFASVLCACCHAGLVDDGWRLFESMSQEYGIIPRLDHY
B8LQA8_______________GTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain