SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63842

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene63842
AATGTGTCTGATTGCACAGTGGTGTGACCGAGCAACTGTGGATGTTCTTCTGCAAAAGTTGTCGAGTGGGACTCCCGAAGACCAAAGAGCAGCAGCTGGTGAGCTACGTCTTCTAGCAAAAAGAAATGCAGATAACAGGATTTGTATTGCAGAGGCTGGTGCCATT

Ace file of the UniGene sp_v3.0_unigene63842

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U-box domain-containing protein 14 [Arabidopsis thaliana] sp\|Q8VZ40.1\|PUB14_ARATH RecName: Full=U-box domain-containing protein 14; AltName: Full=E3 ubiquitin-protein ligase PUB14; AltName: Full=Plant U-box protein 14; AltName: Full=Prototypical U-box dom	-	-	2.0e-12	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	At3g46510; At3g54850; F12A12.30; F28P10.170; GSVIVT00018150001; GSVIVT00024348001; OSJNBa0075G19.19-1; OSJNBa0075G19.19-2; Os06g0102700; OsI_037539; OsI_21270; OsI_38799; OsJ_19806; OsJ_36575; PHYPADRAFT_234651; POPTRDRAFT_567650; POPTRDRAFT_723298; POPTR

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54850.1	ATPUB14, PUB14 plant U-box 14 chr3:20321524-20323848 FORWARD LENGTH=632	4.0e-17	77%
RefSeq	Arabidopsis thaliana	NP_191045.2	U-box domain-containing protein 14 [Arabidopsis thaliana]	5.0e-17	77%
RefSeq	Populus trichocarpa	XP_002311996.1	predicted protein [Populus trichocarpa]	3.0e-17	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 55 - 497

Fln protein: MCLIAQWCDRATVDVLLQKLSSGTPEDQRAAAGELRLLAKRNADNRICIAEAGAI

Protein Length: 56

Fln nts: AATGTGTCTGATTGCACAGTGGTGTGACCGAGCAACTGTGGATGTTCTTCTGCAAAAGTTGTCGAGTGGGACTCCCGAAGACCAAAGAGCAGCAGCTGGTGAGCTACGTCTTCTAGCAAAAAGAAATGCAGATAACAGGATTTGTATTGCAGAGGCTGGTGCCATT

Fln Alignment:

G5KS2UX02JLYBY___LIAQWCD------------------------RATVDVLLQKLSSGTPEDQRAAAGELRLLAKRNADNRICIAEAGAI
C0PSB5_______________LIAQWCESHGVEIPSKAGSSRSDSSDVSFGNRTSIDILVQQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain