SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63824

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene63824
GGCTTAAGTCATCTGGATCTTTCTGGAAATAACTTAAGCGGTCCGGTTCCCCCTGCGTTCGGCCGGCTGCCGGAATTGCAAGTCTTAAATCTCTTCTCTAATACTTACTCAATACTACAATTCCGCCTTTTGTAGGTGATCTTCCAAATCTTTTGCAGCTCAATTTGGCCTACAATCCTCTCACTGGAACTGTACCTCCTGAGCTCGGAAATCTGA

Ace file of the UniGene sp_v3.0_unigene63824

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	4.0e-23	89%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	81%
Sma3	Clavata-like receptor	-	-	6.335e-06	-

Source	Gene names
Sma3	CLV;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G28440.1	HSL1 HAESA-like 1 chr1:9996914-10000171 FORWARD LENGTH=996	4.0e-13	53%
RefSeq	Arabidopsis thaliana	NP_174166.1	receptor-like protein kinase HSL1 [Arabidopsis thaliana]	6.0e-13	53%
RefSeq	Populus trichocarpa	XP_002305776.1	predicted protein [Populus trichocarpa]	2.0e-12	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Separated hits, possible frame ERROR between 102 and 105, Distance to subject end: 785 aas, your sequence is shorter than subject: 72 - 998

Fln protein: GLSHLDLSGNNLSGPVPPAFGRLPELQVLNLFSxxLLNTTIPPFVGDLPNLLQLNLAYNPLTGTVPPELGNL

Protein Length: 73

Fln nts: GGCTTAAGTCATCTGGATCTTTCTGGAAATAACTTAAGCGGTCCGGTTCCCCCTGCGTTCGGCCGGCTGCCGGAATTGCAAGTCTTAAATCTCTTCTCTAAxxxCTTACTCAATACTACAATTCCGCCTTTTGTAGGTGATCTTCCAAATCTTTTGCAGCTCAATTTGGCCTACAATCCTCTCACTGGAACTGTACCTCCTGAGCTCGGAAATCTGA

Fln Alignment:

G5KS2UX02HXEW1___LSHLDLSGNNLSGPVPPAFGRLPELQVLNLFSNxLLNTTIPPFVGDLPNLLQLNLAYNPLTGTVPPELGNL
Q19AV8_______________LRHLDLSGNNLSGPIPPAFGQLLELQVLNLVFNxLLNTTIPPFLGNLPNLLQFNLAYNPFTGTVPPELGNL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain