SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63671

Length: 315 nt

UniGene Fasta

>sp_v3.0_unigene63671
CTCGTCCCACAGACAAGGCCCTTCGTCTGCCCCTCCAGGACGTGTACAAGATTGGTGGTATTGGTACCGTCCCCGTCGGCCGAGTGGAGACTGGTGTCCTGAAGCCCGGTATGGTTGTTACCTTTGCCCCAGCTAACATCACCACTGAGGTCAAGTCTGTGGAGATGCACCACGAAGCCCTCGTTGAGGCCGTTCCCGGTGACAACGTTGGTTTCAACATCAAGAACGTCTCCGTCAAGGAACTGCGTCGTGGTTACGTCGCTGGTGACTCCAAGGCTAACCCCCCCAAGGGTGCTGCTGACTTCACCGCTCAGG

Ace file of the UniGene sp_v3.0_unigene63671

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor-1 alpha (Fragment) n=1 Tax=Dysmachus trigonus RepID=B3FBK4_9MUSC	-	-	0.0	95%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Elongation factor 1-alpha	-	-	7.191e-36	-

Source	Gene names
Sma3	A1; A2; A3; A4; AT1G07930; At1g07920; At1g07920/T6D22.2; At1g07930; At1g07940; At5g60390; EF-1-alpha; EF-1alpha; EF1-A; EF1A; EF1a; MUF9.4; NpeEF1A; PHYPADRAFT_174589; RCOM_1100630; RCOM_1101130; T6D22.2; T6D22.3; T6D22.31; TEF; TEF-C; TEFS1; Tef1; ef-1al

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	79%
RefSeq	Arabidopsis thaliana	NP_001032107.1	Elongation factor 1-alpha [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002326338.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTP0

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 104 - 447

Fln protein: RPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANITTEVKSVEMHHEALVEAVPGDNVGFNIKNVSVKELRRGYVAGDSKANPPKGAADFTAQ

Protein Length: 105

Fln nts: CTCGTCCCACAGACAAGGCCCTTCGTCTGCCCCTCCAGGACGTGTACAAGATTGGTGGTATTGGTACCGTCCCCGTCGGCCGAGTGGAGACTGGTGTCCTGAAGCCCGGTATGGTTGTTACCTTTGCCCCAGCTAACATCACCACTGAGGTCAAGTCTGTGGAGATGCACCACGAAGCCCTCGTTGAGGCCGTTCCCGGTGACAACGTTGGTTTCAACATCAAGAACGTCTCCGTCAAGGAACTGCGTCGTGGTTACGTCGCTGGTGACTCCAAGGCTAACCCCCCCAAGGGTGCTGCTGACTTCACCGCTCAGG

Fln Alignment:

G5KS2UX02HM4FM___RPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANITTEVKSVEMHHEALVEAVPGDNVGFNIKNVSVKELRRGYVAGDSKANPPKGAADFTAQ
C0PTP0_______________RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain