SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63656

Length: 319 nt

UniGene Fasta

>sp_v3.0_unigene63656
AATGTCCTAAACTTAGCAGTAAACAGCCTCACAGGTACCATTCCCTCTTTCATAGGCAACTTTCATCGTTGACTGTTTTGGCTTTAGGAAAAAATAGTCTCACCGGTGCCATTCCTCCACAACTGGGTTTGCTCATAGGTTTAGAAACACTGGAGCTATCAGAAAATGAATTGTCTGGAACCATTCCTACTTCTTTGTCAAATATCTCTACTCTGACTTATTTGGGTATTTTCAGTAACAAACTTAGTGGTATGATTCCACACGAATTGGGTCTGCTCAACAGTCTGCAAATACTTATGTCAATGACAATGAATTGTCT

Ace file of the UniGene sp_v3.0_unigene63656

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana] sp\|Q9LP24.1\|Y1571_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At1g35710; Flags: Precursor gb\|AAF79881.1\|AC021198_1 Contains similarity to receptor	-	-	2.0e-08	38%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	69%

Source	Gene names
Sma3	GSVIVT00017153001; GSVIVT00035485001; LOC_Os11g36160; Os11g0569600; OsJ_34313; POPTRDRAFT_817473; RCOM_0633880; RCOM_1022390; VITISV_022117;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002308696.1	predicted protein [Populus trichocarpa]	4.0e-11	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 418 aas, your sequence is shorter than subject: 106 - 743

Fln protein: NVLNLAVNSLTGTIPxxxxxxSSLTVLALGKNSLTGAIPPQLGLLIGLETLELSENELSGTIPTSLSNISTLTYLGIFSNKLSGMIPHELGLLNSLQILMSMTMNC

Protein Length: 107

Fln nts: AATGTCCTAAACTTAGCAGTAAACAGCCTCACAGGTACCATTCCCxxxxxxxxxxxxxxxxxxTCATCGTTGACTGTTTTGGCTTTAGGAAAAAATAGTCTCACCGGTGCCATTCCTCCACAACTGGGTTTGCTCATAGGTTTAGAAACACTGGAGCTATCAGAAAATGAATTGTCTGGAACCATTCCTACTTCTTTGTCAAATATCTCTACTCTGACTTATTTGGGTATTTTCAGTAACAAACTTAGTGGTATGATTCCACACGAATTGGGTCTGCTCAACAGTCTGCAAATACTTATGTCAATGACAATGAATTGTCT

Fln Alignment:

G5KS2UX02HJ5ED___NSLTGTIPSxxxxLSSLTVLALGKNSLTGAIPPQXXXXXXXXXXXXXXXXXXXXIPTSLSNISTLTYLGIFSNKLSGMIPHELGLLNSLQILMSMTMN
I4DUG2_______________NRLSGSIPSxxxxLSSLTSLHLSTNQFQGLIPPELGMLTHLHELRLFENHLSGSIPSSLTNLSKLNILDLYSNQLSGHVPWDIGTKLSNLTYLSLWAN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain