SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63624

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene63624
AATGTAAGGATCGAATAACGCCGGATGCTTCTAAGTTGCTGCCAGGATGAGGAACAAGGATCGAATAACGCCGGATGCCTCAAGGGAAACAAATTGCTGGGATGCAGATATAGAGTGCTCCTATGGATGGGTTGAATGTGTTGGTCTTGCAGACAGATCTTCTTATGTCTTGAAGGCACATACTGAAACAAGCGCTGTGTTTCTTGTCGTTTA

Ace file of the UniGene sp_v3.0_unigene63624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNA synthetase class II (G, H, P and S)-like protein [Arabidopsis thaliana] gb\|AEE31144.1\| tRNA synthetase class II (G, H, P and S)-like protein [Arabidopsis thaliana]	-	-	1.0e-10	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	At1g29870; F1N18.9; MICPUN_78842; OSTLU_12730; Os08g0538000; OsI_30061; OsJ_28106; P0665C04.32; PHYPADRAFT_197945;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	glycine-tRNA ligase activity	GO:0004820	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	glycyl-tRNA aminoacylation	GO:0006426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WHEP-TRS	IPR000738	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Glycyl-tRNA synthetase, alpha2 dimer	IPR002315	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3		IPR018160	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G29870.1	tRNA synthetase class II (G, H, P and S) family protein chr1:10456902-10458782 REVERSE LENGTH=463	7.0e-15	70%
RefSeq	Arabidopsis thaliana	NP_174280.2	tRNA synthetase class II (G, H, P and S)-like protein [Arabidopsis thaliana]	9.0e-15	70%
RefSeq	Populus trichocarpa	XP_002297878.1	predicted protein [Populus trichocarpa]	1.0e-13	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRG7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 249 aas, your sequence is shorter than subject: 70 - 740

Fln protein: M*GSNNAGCF*VAARMRNKDRITPDASRETNCWDADIECSYGWVECVGLADRSSYVLKAHTETSAVFLVV

Protein Length: 71

Fln nts: AATGTAAGGATCGAATAACGCCGGATGCTTCTAAGTTGCTGCCAGGATGAGGAACAAGGATCGAATAACGCCGGATGCCTCAAGGGAAACAAATTGCTGGGATGCAGATATAGAGTGCTCCTATGGATGGGTTGAATGTGTTGGTCTTGCAGACAGATCTTCTTATGTCTTGAAGGCACATACTGAAACAAGCGCTGTGTTTCTTGTCGTTTA

Fln Alignment:

G5KS2UX02ITIQ1___NCWDADIECSYGWVECVGLADRSSYVLKAHTETSAVFLV
C0PRG7_______________DCWDAEIECSYGWVECVGLADRSAYDLKAHTEKSAVPLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain