SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63574

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene63574
AATGTGTTTGCAAGTGTTTTGCCGGTGTGCGCCAATTTGGGAAACCTTGAACAGGGCAAGGAGATCCACCATGAGATCGATATAAGTGGGTATCAGTCTGATGTCTACGTGGGTAGTGCCCTCGTCGATATGTATTTGAAATGCGGCAGTGTAGAGGATGCACGCCAAGTTTTTGACAAAATGCCTAGGCGGATGTGATTTCCT

Ace file of the UniGene sp_v3.0_unigene63574

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 43 n=1 Tax=Funaria hygrometrica RepID=F5CAD7_FUNHY	-	-	4.0e-12	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00019609001; GSVIVT00022397001; VITISV_001089;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	5.0e-16	54%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-16	54%
RefSeq	Populus trichocarpa	XP_002322703.1	predicted protein [Populus trichocarpa]	4.0e-16	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 134 aas, your sequence is shorter than subject: 66 - 232

Fln protein: NVFASVLPVCANLGNLEQGKEIHHEIDISGYQSDVYVGSALVDMYLKCGSVEDARQVFDKMPRRM*

Protein Length: 67

Fln nts: AATGTGTTTGCAAGTGTTTTGCCGGTGTGCGCCAATTTGGGAAACCTTGAACAGGGCAAGGAGATCCACCATGAGATCGATATAAGTGGGTATCAGTCTGATGTCTACGTGGGTAGTGCCCTCGTCGATATGTATTTGAAATGCGGCAGTGTAGAGGATGCACGCCAAGTTTTTGACAAAATGCCTAGGCGGATGTGATTTCCT

Fln Alignment:

G5KS2UX02GZ7A2___FASVLPVCANLGNLEQGKEIHHEIDISGYQSDVYVGSALVDMYLKCGSVEDARQVFDKMPRR
D5AB53_______________FPSVLPACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain