SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63563

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene63563
AATGTCTATATGCTCTGGAAAACGGTAAGCAAGTCCACGCTCTAATAATCAAAACTGGTTTTGCGTCATTTATTTTCGTGGAGCATGCCTTCTTGAATCAGATGTCTTTGTGGGGACATCCCTTGTTGACATGTATGCGAAGTGTGGGACTATATATGATGCATGCAGGATTTTTAACAGAATGCCAGAACATAATGTGGTCACTTGGACTGCAATGATTACAGGATAT

Ace file of the UniGene sp_v3.0_unigene63563

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein PPR1106-17 n=2 Tax=Andropogoneae RepID=B6SWY6_MAIZE	-	-	5.0e-11	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Os09g0413300 protein	-	-	9.747e-06	-

Source	Gene names
Sma3	GSVIVT00008419001; GSVIVT00017181001; GSVIVT00031188001; Os09g0413300; OsI_31353; OsJ_29347; PPR1;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52630.1	MEF1 mitochondrial RNAediting factor 1 chr5:21350375-21352141 FORWARD LENGTH=588	3.0e-13	62%
RefSeq	Arabidopsis thaliana	NP_200075.1	mitochondrial RNA editing factor 1 [Arabidopsis thaliana]	3.0e-13	62%
RefSeq	Populus trichocarpa	XP_002314694.1	predicted protein [Populus trichocarpa]	4.0e-14	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Separated hits, possible frame ERROR between 80 and 95, Distance to subject end: 126 aas, your sequence is shorter than subject: 76 - 232

Fln protein: CLYALENGKQVHALIIKTGFASFIFxxxxxxESDVFVGTSLVDMYAKCGTIYDACRIFNRMPEHNVVTWTAMITGY

Protein Length: 77

Fln nts: AATGTCTATATGCTCTGGAAAACGGTAAGCAAGTCCACGCTCTAATAATCAAAACTGGTTTTGCGTCATTTATTTTCGTxxxxxxxxxxxxxxxTGAATCAGATGTCTTTGTGGGGACATCCCTTGTTGACATGTATGCGAAGTGTGGGACTATATATGATGCATGCAGGATTTTTAACAGAATGCCAGAACATAATGTGGTCACTTGGACTGCAATGATTACAGGATAT

Fln Alignment:

G5KS2UX02FR1XO___LYALENGKQVHALIIKTGFASFIFVxxxxxESDVFVGTSLVDMYAKCGTIYDACRIFNRMPEHNVVTWTAMITGY
D5AB53_______________LAALEPGKVLHLYIIKSGFESDVFVxxxxxESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain