SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63470

Length: 357 nt

UniGene Fasta

>sp_v3.0_unigene63470
AATGTATAGGTACCCGATCCCATGGATTGATGACCTTCTTGACCAACTGAAGGGGGCAAAATATTTCAACAAAATCGACTTGAAGCCCGGCTATCACTAGGTACCAATTGAACCCTCCGATGTGTGGAAGACTGCCTTCAAAGCTAAGGAGGGCCTTTTTGAATAGTTGGTTATGCCTTTTGGGTTGATGAATGCTCCTGCAACCTTCATGAGGCTGATGAATGACATCTTGTGGCGATTCACCAACTCATTTTGTAGTGGTATACTTGGATGACATCTTGATCTTCAGCCAGAGTTGGGAAGAGCACCTCCACCACATCCGACAGGTTCTCCAAACACTGCAACAACACAAGTTGT

Ace file of the UniGene sp_v3.0_unigene63470

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA	-	-	9.0e-39	91%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	48%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	4.379e-36	-

Source	Gene names
Sma3	17.t00023; 20.t00045; AT4g04230; AT4g10580; At2g04670; At2g06170; At2g06890; At2g07660; At2g10780; At2g14650; H0201G08.12; H0211A12.9; H0306B06.3; H0502G05.10; H0616A11.2; H0616A11.5; H0624F09.1; H0807C06-H0308C08.3; H0818H01.18; H0823A09.5; LOC_Os03g0535

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: Overlapping hits, possible frame ERROR between 253 and 249, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 119 - 142

Fln protein: MYRYPIPWIDDLLDQLKGAKYFNKIDLKPGYH*VPIEPSDVWKTAFKAKEGLFE*LVMPFGLMNAPATFMRLMNDILWRFTNxxxVVVYLDDILIFSQSWEEHLHHIRQVLQTLQQHKL

Protein Length: 120

Fln nts: AATGTATAGGTACCCGATCCCATGGATTGATGACCTTCTTGACCAACTGAAGGGGGCAAAATATTTCAACAAAATCGACTTGAAGCCCGGCTATCACTAGGTACCAATTGAACCCTCCGATGTGTGGAAGACTGCCTTCAAAGCTAAGGAGGGCCTTTTTGAATAGTTGGTTATGCCTTTTGGGTTGATGAATGCTCCTGCAACCTTCATGAGGCTGATGAATGACATCTTGTGGCGATTCACCAACxxxxxxxxxGTAGTGGTATACTTGGATGACATCTTGATCTTCAGCCAGAGTTGGGAAGAGCACCTCCACCACATCCGACAGGTTCTCCAAACACTGCAACAACACAAGTTGT

Fln Alignment:

G5KS2UX02IJP3R___RYPIPWIDDLLDQLKGAKYFNKIDLKPGYH*VPIEPSDVWKTAFKAKEGLFE*LVMPFGLMNAPATFMRLMNDILWRFTNxxVVVYLDDIL---IFSQSWEEHLHHIRQVLQT
P31843_______________KYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDxxVVVYLDDLVVYTIYSNSLHEHIKHLRVVRES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain