SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63468

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene63468
AATGTAGTTGTATGCTACCCATGACTTAGAATTTAGCAGCAAATGATGTTAACCTTGAAACTGTGGAGTCACTACCTCGTTGGGAAAAGATATGAGTTAAGAACAGATCATCAAAGCCTGAAGCATCTCTTCACTCAAAGGGATTTGAATGCTAGACAAAGGCGGTGGAGCAAATTCACGAGTGAAGTATGATTTTGAGATCTCA

Ace file of the UniGene sp_v3.0_unigene63468

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53JQ8_ORYSJ	-	-	9.0e-10	61%
FL-Next	tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice).	-	-	0.0	71%

Source	Gene names
Sma3	LOC_Os11g20220; LOC_Os12g18460; OSJNBa0035M09.12;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2QTU7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 542 aas, your sequence is shorter than subject: 64 - 1847

Fln protein: NVVVCYP*LRI*QQMMLTLKLWSHYLVGKRYELRTDHQSLKHLFTQRDLNARQRRWSKFTSEV*

Protein Length: 65

Fln nts: AATGTAGTTGTATGCTACCCATGACTTAGAATTTAGCAGCAAATGATGTTAACCTTGAAACTGTGGAGTCACTACCTCGTTGGGAAAAGATATGAGTTAAGAACAGATCATCAAAGCCTGAAGCATCTCTTCACTCAAAGGGATTTGAATGCTAGACAAAGGCGGTGGAGCAAATTCACGAGTGAAGTATGATTTTGAGATCTCA

Fln Alignment:

G5KS2UX02FKJTR___LKLWSHYLVGKRYELRTDHQSLKHLFTQRDLNARQRRW
Q2QTU7_______________LKIWRHYLIGNRYEIYTDHKSLKYIFTQSDLNLRQRRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain