SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63458

Length: 244 nt

UniGene Fasta

>sp_v3.0_unigene63458
AATGTATTTCCTTGTGCTCTCGAGGTATGTGCGAAGCCTAGGATCTTCTGCTTTATGGCAGGGTAAAGAGATACGCCACTGCATAATTAGGTGTGGGTTAGAATCTGATCTGTTTGTGGGTAATGCGCTTGTGCCGATGTATGCCAAATGCGGAAGTGTACAATATGCACGTCAAGTGTTTGACAAAATTCCTCAGACATATGTCATCTCATGGAATGCAATTATTGGTGGTTATGCATATAAT

Ace file of the UniGene sp_v3.0_unigene63458

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SS83.1\|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040, mitochondrial; Flags: Precursor gb\|AAD56320.1\|AC009326_7 hypothetical protein [Arabidopsis thal	-	-	1.0e-11	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic	-	-	6.335e-06	-

Source	Gene names
Sma3	At3g57430; PCMP-H81; T8H10.30;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	2.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-15	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 81 - 795

Fln protein: MYFLVLSRYVRSLGSSALWQGKEIRHCIIRCGLESDLFVGNALVPMYAKCGSVQYARQVFDKIPQTYVISWNAIIGGYAYN

Protein Length: 82

Fln nts: AATGTATTTCCTTGTGCTCTCGAGGTATGTGCGAAGCCTAGGATCTTCTGCTTTATGGCAGGGTAAAGAGATACGCCACTGCATAATTAGGTGTGGGTTAGAATCTGATCTGTTTGTGGGTAATGCGCTTGTGCCGATGTATGCCAAATGCGGAAGTGTACAATATGCACGTCAAGTGTTTGACAAAATTCCTCAGACATATGTCATCTCATGGAATGCAATTATTGGTGGTTATGCATATAAT

Fln Alignment:

G5KS2UX02JDOT4___LVLSRYVRSLGS-SALWQGKEIRHCIIRCGLESDLFVGNALVPMYAKCGSVQYARQVFDKIPQTYVISWNAIIGGYAYN
B8LQA8_______________LVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain