SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63435

Length: 260 nt

UniGene Fasta

>sp_v3.0_unigene63435
AATGTCCAAGAGACCGCTGGAGCTCAAGGACGTGCCATTGCTGGCACCGAGAGATCGAGCCGAGAGTTCATATGATGTGCTCAAGGACAACTGGGAGAAACTGAAGGTCCAGAATCCGAACGAACAGCCTTCTTTAACCAGAGCGATTTTCATGTCCTTCTGGAGGGAGGCGCTAAAGAATGGCATTTTCGCAGGCATGAATACCGTTGTATCATACGTGGGTCCTTTCCTGATAAGCTATTTCGTGGATTATTTAAGCG

Ace file of the UniGene sp_v3.0_unigene63435

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	multi-drug resistance protein [Arabidopsis thaliana]	-	-	3.0e-30	72%
FL-Next	sp=ABC transporter C family member 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	Multidrug resistance protein ABC transporter family	-	-	1.167e-06	-

Source	Gene names
Sma3	At1g04120; F20D22.11; GSVIVT00028494001; LOC_Os03g04920; MRP5; Os03g0142800; OsI_09965; POPTRDRAFT_573380; POPTRDRAFT_756380; RCOM_0541580; lpa1;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04120.1	ATMRP5, MRP5, ATABCC5, ABCC5 multidrug resistance-associated protein 5 chr1:1064848-1070396 REVERSE LENGTH=1514	7.0e-37	72%
RefSeq	Arabidopsis thaliana	NP_001184906.1	ABC transporter C family member 5 [Arabidopsis thaliana]	9.0e-37	72%
RefSeq	Populus trichocarpa	XP_002301841.1	multidrug resistance protein ABC transporter family, partial [Populus trichocarpa]	2.0e-34	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7GB25

Fln msg: Distance to subject end: 1178 aas, your sequence is shorter than subject: 86 - 1514

Fln protein: MSKRPLELKDVPLLAPRDRAESSYDVLKDNWEKLKVQNPNEQPSLTRAIFMSFWREALKNGIFAGMNTVVSYVGPFLISYFVDYLS

Protein Length: 87

Fln nts: AATGTCCAAGAGACCGCTGGAGCTCAAGGACGTGCCATTGCTGGCACCGAGAGATCGAGCCGAGAGTTCATATGATGTGCTCAAGGACAACTGGGAGAAACTGAAGGTCCAGAATCCGAACGAACAGCCTTCTTTAACCAGAGCGATTTTCATGTCCTTCTGGAGGGAGGCGCTAAAGAATGGCATTTTCGCAGGCATGAATACCGTTGTATCATACGTGGGTCCTTTCCTGATAAGCTATTTCGTGGATTATTTAAGCG

Fln Alignment:

G5KS2UX02JS8CK___SKRPLELKDVPLLAPRDRAESSYDVLKDNWEKLKVQNPNEQPSLTRAIFMSFWREALKNGIFAGMNTVVSYVGPFLISYFVDYL
Q7GB25_______________SKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain