SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63432

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene63432
AATGTAACCTCAAGGAGCTTGGATTCACAGCGATGACGGAAGATGCGTATGCTTCTGCTATCTTCTCTCTTTTGAATGCAAAGGTTCATTCTCTAGCAGGAGAGGATCATCTAACATCTGTGCTGCAACCTATCAGAGACTGGATCCAGGCTGTTCCTCTTGGGTTTCTACATATAATTTTACCTTATCTGTGTCTTCCATCTCAAGATAACAACAGAGATCTACATAATCTTGCA

Ace file of the UniGene sp_v3.0_unigene63432

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin ligase apc2, putative n=1 Tax=Ricinus communis RepID=B9S900_RICCO	-	-	3.0e-17	69%
FL-Next	sp=Anaphase-promoting complex subunit 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%

Source	Gene names
Sma3	At2g04660; At2g04660/F28I8.30; GSVIVT00036925001; H0805A05.11; OJ000223_09.3; OSJNBa0081L15.13; Os04g0484800; OsI_16372; OsJ_15239; POPTRDRAFT_832637; RCOM_0837560; SDM1_49t00001;

Source	GOs	Term	Type	Identity
Sma3	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	ubiquitin protein ligase binding	GO:0031625	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Anaphase-promoting complex subunit 2, C-terminal	IPR014786	-	-
Sma3	Cullin homology	IPR016158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04660.1	APC2 anaphase-promoting complex/cyclosome 2 chr2:1624933-1629039 FORWARD LENGTH=865	1.0e-19	62%
RefSeq	Arabidopsis thaliana	NP_178543.2	anaphase-promoting complex subunit 2 [Arabidopsis thaliana]	1.0e-19	62%
RefSeq	Populus trichocarpa	XP_002311316.1	predicted protein [Populus trichocarpa]	7.0e-20	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H1U5

Fln msg: Distance to subject end: 540 aas, your sequence is shorter than subject: 78 - 865

Fln protein: CNLKELGFTAMTEDAYASAIFSLLNAKVHSLAGEDHLTSVLQPIRDWIQAVPLGFLHIILPYLCLPSQDNNRDLHNLA

Protein Length: 79

Fln nts: AATGTAACCTCAAGGAGCTTGGATTCACAGCGATGACGGAAGATGCGTATGCTTCTGCTATCTTCTCTCTTTTGAATGCAAAGGTTCATTCTCTAGCAGGAGAGGATCATCTAACATCTGTGCTGCAACCTATCAGAGACTGGATCCAGGCTGTTCCTCTTGGGTTTCTACATATAATTTTACCTTATCTGTGTCTTCCATCTCAAGATAACAACAGAGATCTACATAATCTTGCA

Fln Alignment:

G5KS2UX02JB1ES___NLKELGFTAMTEDAYASAIFSLLNAKVHSLAGEDHLTSVLQPIRDWIQAVPLGFLHIILPYL
Q8H1U5_______________DLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESIKEWIQTVPLQFLNALLSYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain