SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63414

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene63414
AATGTAATGCCCATGCATCCAATATTGTCTCTGCTGTGTTTATTGCAACAGGCCAAGATCCTGCCCAGAACATTGAGAGCTCTCATTGCATTACAATGATGGAGGCATCTAACGGTGGCAAGGATCTGCATGTTTCGGTCACAATGCCTTGTATTGAGGTGGGAACAGTAGGAGGTGGGAC

Ace file of the UniGene sp_v3.0_unigene63414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Taxus x media RepID=Q6WP38_9CONI	-	-	1.0e-24	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	3-hydroxy-3-methylglutaryl coenzyme A reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase (NADPH).	EC:1.1.1.34	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Terpenoid backbone biosynthesis	00900	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AHM1; AHM4; At1g76490; At2g17370; Cm-HMGR; F5J6.24; GSVIVT00002942001; GSVIVT00006002001; GSVIVT00036301001; GenHMG1; GenHMG2; HMG1; HMG2; HMG3; HMGR; HMGR1; HMGR2; HMGR3; HMGRL; HMGr; HbHMGR; LOC_Os08g40180; Os08g0512700; Os09g0492700; OsI_008506; OsI_08

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	plastid membrane	GO:0042170	Cellular Component	-
Sma3	hydroxymethylglutaryl-CoA reductase (NADPH) activity	GO:0004420	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, eukaryotic/arcaheal type	IPR004554	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76490.1	HMG1, HMGR1, AtHMGR1 hydroxy methylglutaryl CoA reductase 1 chr1:28695801-28698206 FORWARD LENGTH=642	2.0e-28	87%
RefSeq	Arabidopsis thaliana	NP_177775.2	hydroxy methylglutaryl CoA reductase 1 [Arabidopsis thaliana]	2.0e-28	87%
RefSeq	Populus trichocarpa	XP_002301898.1	predicted protein [Populus trichocarpa]	5.0e-30	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAJ6

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 59 - 305

Fln protein: CNAHASNIVSAVFIATGQDPAQNIESSHCITMMEASNGGKDLHVSVTMPCIEVGTVGGG

Protein Length: 60

Fln nts: AATGTAATGCCCATGCATCCAATATTGTCTCTGCTGTGTTTATTGCAACAGGCCAAGATCCTGCCCAGAACATTGAGAGCTCTCATTGCATTACAATGATGGAGGCATCTAACGGTGGCAAGGATCTGCATGTTTCGGTCACAATGCCTTGTATTGAGGTGGGAACAGTAGGAGGTGGGAC

Fln Alignment:

G5KS2UX02G9MKH___NAHASNIVSAVFIATGQDPAQNIESSHCITMMEASNGGKDLHVSVTMPCIEVGTVGGG
D5AAJ6_______________NAHASNIVSAIFIATGQDPAQNVESSHCITMMEASNGGKDLHVSVTMPCIEVGTVGGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain