SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63365

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene63365
AATGTAGATTGCTGTCTTATTACTTCAGGAAATTTCTCATCTACAGCGGGTGCAAGGGCCTAGTGCTGTCAGTGTGAAGGAGGAAATGGCCAGACTTTCTCACCATCTTGGTTCTTTACCTCTTCTTGCAAAGCACCGGATAAGTTGCATCCGAACCGCTAATAAAAAGGAACATGGACGTGCAGAACTATGCATTTCAAATTTTCATGGAAGTGAGTGCCAAAGATCCTATTGT

Ace file of the UniGene sp_v3.0_unigene63365

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vascular protein 7 (Fragment) n=1 Tax=Plantago major RepID=Q1EML8_PLAMJ	-	-	1.0e-17	79%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	81%

Source	Gene names
Sma3	At3g50600; GSVIVT00011911001; Os09g0408000; OsI_31321; OsJ_29312; P0465E03.10; PHYPADRAFT_124044; RCOM_0601590; T20E23_200; vp7;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50590.1	Transducin/WD40 repeat-like superfamily protein chr3:18771292-18779220 FORWARD LENGTH=1614	3.0e-18	75%
RefSeq	Arabidopsis thaliana	NP_190628.6	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	4.0e-18	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S8J3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 87 aas, your sequence is shorter than subject: 78 - 1594

Fln protein: M*IAVLLLQEISHLQRVQGPSAVSVKEEMARLSHHLGSLPLLAKHRISCIRTANKKEHGRAELCISNFHGSECQRSYC

Protein Length: 79

Fln nts: AATGTAGATTGCTGTCTTATTACTTCAGGAAATTTCTCATCTACAGCGGGTGCAAGGGCCTAGTGCTGTCAGTGTGAAGGAGGAAATGGCCAGACTTTCTCACCATCTTGGTTCTTTACCTCTTCTTGCAAAGCACCGGATAAGTTGCATCCGAACCGCTAATAAAAAGGAACATGGACGTGCAGAACTATGCATTTCAAATTTTCATGGAAGTGAGTGCCAAAGATCCTATTGT

Fln Alignment:

G5KS2UX02JQFFD___IAVLLLQEISHLQRVQGPSAVSVKEEMARLSHHLGSLPLLAKHRISCIRTANKK
B9S8J3_______________IAVTLLQEISRLQKVQGPSALSAKDEMARLSRHLGSLPLLAKHRINCIRTAIKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain