SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63340

Length: 154 nt

UniGene Fasta

>sp_v3.0_unigene63340
AATGTCTAATGTTTGGTTTACCGGAGATAATTTTATTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTCGCTTCATATTTGTTAATTAATTTCTGGTTTACACGACTTAAGGCAGATAAAGCAGCTATCAAAGCTATGCTTGTCAATCGAGTA

Ace file of the UniGene sp_v3.0_unigene63340

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nad5 gene protein (Fragment) n=1 Tax=Tetraphis pellucida RepID=O47899_9BRYO	-	-	4.0e-17	95%
FL-Next	tr=NADH-plastoquinone oxidoreductase subunit 5; Taiwania cryptomerioides. Plastid; Chloroplast.	-	-	0.0	56%
Sma3	NADH-ubiquinone oxidoreductase chain 5	-	-	3.155e-06	-

Source	Gene names
Sma3	NAD5; ND5; Nad5; nad5; nad5 gene; nd5;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial respiratory chain	GO:0005746	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal	IPR001516	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3		IPR003916	-	-
Sma3	NADH-plastoquinone oxidoreductase, chain 5	IPR003945	-	-
Sma3	NADH dehydrogenase subunit 5, C-terminal	IPR010934	-	-
Sma3	NADH-plastoquinone oxidoreductase, chain 5 subgroup	IPR018393	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00665.1	NAD5B, NAD5.2, NAD5 NADH dehydrogenase 5B chrM:190740-190761 REVERSE LENGTH=669	8.0e-21	88%
RefSeq	Arabidopsis thaliana	NP_085478.1	NADH dehydrogenase subunit 5 (mitochondrion) [Arabidopsis thaliana]	1.0e-20	88%
RefSeq	Populus trichocarpa	XP_002333105.1	predicted protein [Populus trichocarpa]	7.0e-22	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G4LAV3

Fln msg: Distance to subject end: 551 aas, your sequence is shorter than subject: 51 - 735

Fln protein: MSNVWFTGDNFIQLFLGWEGVGLASYLLINFWFTRLKADKAAIKAMLVNRV

Protein Length: 52

Fln nts: AATGTCTAATGTTTGGTTTACCGGAGATAATTTTATTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTCGCTTCATATTTGTTAATTAATTTCTGGTTTACACGACTTAAGGCAGATAAAGCAGCTATCAAAGCTATGCTTGTCAATCGAGTA

Fln Alignment:

G5KS2UX02HPP8R___NFIQLFLGWEGVGLASYLLINFWFTRLKADKAAIKAMLVNR
G4LAV3_______________NLLQIYLFWELVGMCSYLLIGFWFTRPSAANACQKAFITNR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain