SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63326

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene63326
AATGTATAAAATAGAACTTGTACTCCTTACAACTCCAACTACTTCCAACAAGAACGGATGAAATTGATTGTTGAAGCTTCAGAAGGCTTTATATATCTTGTGAGCATAACTGGTGTGACTGGTGCCCGTGCTTCAATAGAATCACGTGTTGAGTTTCTTCTTCAA

Ace file of the UniGene sp_v3.0_unigene63326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tryptophan synthase alpha subunit (Fragment) n=2 Tax=Spermatophyta RepID=Q1ERH4_PINTH	-	-	1.0e-12	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Tryptophan synthase alpha subunit	-	-	9.092e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:4.2.1.2-	-	3.742e-07	-

Source	Gene names
Sma3	AoTSA; At3g54640; GSVIVT00023836001; GbTSA; InTSA; LOC_Os03g58260; MpTSA; OSJNBa0094F01.18; Os03g0797000; OsI_13899; OsJ_12954; PtTSA; RCOM_0991580; T14E10_210; TSA1; TgTSA; VITISV_007742; tsa;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	tryptophan synthase activity	GO:0004834	Molecular Function	-
Sma3	tryptophan metabolic process	GO:0006568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tryptophan synthase, alpha chain	IPR002028	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Tryptophan synthase, alpha chain, active site	IPR018204	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABD1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 72 aas, your sequence is shorter than subject: 55 - 350

Fln protein: NV*NRTCTPYNSNYFQQERMKLIVEASEGFIYLVSITGVTGARASIESRVEFLLQ

Protein Length: 56

Fln nts: AATGTATAAAATAGAACTTGTACTCCTTACAACTCCAACTACTTCCAACAAGAACGGATGAAATTGATTGTTGAAGCTTCAGAAGGCTTTATATATCTTGTGAGCATAACTGGTGTGACTGGTGCCCGTGCTTCAATAGAATCACGTGTTGAGTTTCTTCTTCAA

Fln Alignment:

G5KS2UX02F7S9I___ERMKLIVEASEGFIYLVSITGVTGARASIESRVEFLLQ
D5ABD1_______________ERMKLIVEASEGFIYLVSITGVTGARATIESRVELLLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain