SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63281

Length: 235 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene63281
ATTTCCATTAATGCCAAATGGAAGCCTAGAGAAGTGGTTATATCCCGATGATGGAGAACAAAGTGGTTTGAGTTTGATTCAAAGGTTGAATATAGCAATAGACATTGCCCAAGGTGTGACATATCTCCATCACCATTGTTTTGTGCAAGTGATCCATTGTGATTTGAAACCCAACAATATACTTTTGGGTGAAGATATGACTGACATATTTAATAGACTTTGGCATTGCTACATT

Ace file of the UniGene sp_v3.0_unigene63281 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase-like protein pac.Erf.10 (Fragment) n=1 Tax=Platanus x acerifolia RepID=B6D3Q7_PLAAC	-	-	2.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Kinase-like protein	-	-	9.416e-13	-

Source	Gene names
Sma3	At2g24130; GSVIVT00004217001; GSVIVT00005204001; GSVIVT00017170001; GSVIVT00018756001; GSVIVT00018759001; GSVIVT00018766001; GSVIVT00018948001; GSVIVT00025191001; GSVIVT00025215001; GSVIVT00025217001; GSVIVT00028428001; GSVIVT00029735001; GSVIVT0002973800

Source	GOs	Term	Type	Identity
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Copine	IPR010734	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein chr2:10258148-10261220 FORWARD LENGTH=980	1.0e-21	59%
RefSeq	Arabidopsis thaliana	NP_179990.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	2.0e-21	59%
RefSeq	Populus trichocarpa	XP_002309364.1	predicted protein [Populus trichocarpa]	4.0e-22	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: Distance to subject end: 136 aas, your sequence is shorter than subject: 78 - 360

Fln protein: FPLMPNGSLEKWLYPDDGEQSGLSLIQRLNIAIDIAQGVTYLHHHCFVQVIHCDLKPNNILLGEDMTDIFNRLWHCYI

Protein Length: 79

Fln nts: ATTTCCATTAATGCCAAATGGAAGCCTAGAGAAGTGGTTATATCCCGATGATGGAGAACAAAGTGGTTTGAGTTTGATTCAAAGGTTGAATATAGCAATAGACATTGCCCAAGGTGTGACATATCTCCATCACCATTGTTTTGTGCAAGTGATCCATTGTGATTTGAAACCCAACAATATACTTTTGGGTGAAGATATGACTGACATATTTAATAGACTTTGGCATTGCTACATT

Fln Alignment:

G5KS2UX02II75V___FPLMPNGSLEKWLYPDDGEQSGLSLIQRLNIAIDIAQGVTYLHHHCFVQVIHCDLKPNNILLGEDM
B8LPH3_______________YDLMQNGSLDGILHSRSPNKVSLDWAARNKIALGSARGIAYLHHDCIPHIIHRDIKSSNILLDEEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain