SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63276

Length: 157 nt

UniGene Fasta

>sp_v3.0_unigene63276
AATGTACTTTCATTCCATGAGTCAAGATAACTAATTAATGGTATTTTACCAACAGCTGAGCATTATGCGTGTGTTGTTGATCTCCTTGGGCGTGCTGGCTGTTTAGTGGAAGCACATGATGTTATCAGTAAAATGCCTTTTGAACCAACTGCTGATA

Ace file of the UniGene sp_v3.0_unigene63276

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	1.0e-07	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%

Source	Gene names
Sma3	GSVIVT00023202001; VITISV_038410;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	2.0e-11	60%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-11	60%
RefSeq	Populus trichocarpa	XP_002310520.1	predicted protein [Populus trichocarpa]	7.0e-11	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A804

Fln msg: Distance to subject end: 202 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 42 - 246

Fln protein: LINGILPTAEHYACVVDLLGRAGCLVEAHDVISKMPFEPTAD

Protein Length: 43

Fln nts: AATGTACTTTCATTCCATGAGTCAAGATAACTAATTAATGGTATTTTACCAACAGCTGAGCATTATGCGTGTGTTGTTGATCTCCTTGGGCGTGCTGGCTGTTTAGTGGAAGCACATGATGTTATCAGTAAAATGCCTTTTGAACCAACTGCTGATA

Fln Alignment:

G5KS2UX02GRBE2___GILPTAEHYACVVDLLGRAGCLVEAHDVISKMPFEP
D5A804_______________GIEPRVKHYACMVDILGRAGCLDEAHDFISNMPLEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain