SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63273

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene63273
AATGTAGATGTAATCGTGGGGACTGCCCTTGTAGATATGTACGCTAAAATTGGGGTTAGAGAAGATGCACGCCAAGTGTTTGACAAAATGCCAGAGAAGAACGTATTTTCATGGACTGTGATAATATCAGAATATGCTAAGCATGGGCATGGGGGCGAGGTCTTTAAATTATTTAAAGGA

Ace file of the UniGene sp_v3.0_unigene63273

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q7Y211.2\|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb\|AEE79654.1\| pentatricopeptide repeat-containing protein [Ara	-	-	1.0e-10	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Gene names
Sma3	GSVIVT00035691001; VITISV_016375;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	9.0e-15	54%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-14	54%
RefSeq	Populus trichocarpa	XP_002310672.1	predicted protein [Populus trichocarpa]	1.0e-15	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Distance to subject end: 280 aas, your sequence is shorter than subject: 60 - 514

Fln protein: NVDVIVGTALVDMYAKIGVREDARQVFDKMPEKNVFSWTVIISEYAKHGHGGEVFKLFKG

Protein Length: 61

Fln nts: AATGTAGATGTAATCGTGGGGACTGCCCTTGTAGATATGTACGCTAAAATTGGGGTTAGAGAAGATGCACGCCAAGTGTTTGACAAAATGCCAGAGAAGAACGTATTTTCATGGACTGTGATAATATCAGAATATGCTAAGCATGGGCATGGGGGCGAGGTCTTTAAATTATTTAAAGGA

Fln Alignment:

G5KS2UX02GFWX1___VDVIVGTALVDMYAKIGVREDARQVFDKMPEKNVFSWTVIISEYAKHGHGGEVFKLFK
D5AD86_______________LDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain