UniGene Name: sp_v3.0_unigene63128
Length: 180 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene63128
A |
Ace file of the UniGene sp_v3.0_unigene63128 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Os11g0224300 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0ITS1_ORYSJ | - | - | 2.0e-13 | 56% |
FL-Next | tr=Putative uncharacterized protein; Vitis vinifera (Grape). | - | - | 0.0 | 65% |
Sma3 | Retrotransposon protein, putative, unclassified | - | - | 3.032e-06 | - |
Source | Gene names |
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Sma3 | LOC_Os11g08610; LOC_Os11g32060; LOC_Os12g31470; VITISV_008352; VITISV_017554; VITISV_023011; VITISV_025787; VITISV_026680; VITISV_044100; |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | chromatin | GO:0000785 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | chromatin binding | GO:0003682 | Molecular Function | 0.0 | - |
Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
Sma3 | RNA-directed DNA polymerase activity | GO:0003964 | Molecular Function | 0.0 | - |
Sma3 | aspartic-type endopeptidase activity | GO:0004190 | Molecular Function | 0.0 | - |
Sma3 | endonuclease activity | GO:0004519 | Molecular Function | 0.0 | - |
Sma3 | protein serine/threonine kinase activity | GO:0004674 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | RNA-dependent DNA replication | GO:0006278 | Biological Process | 0.0 | - |
Sma3 | chromatin assembly or disassembly | GO:0006333 | Biological Process | 0.0 | - |
Sma3 | protein phosphorylation | GO:0006468 | Biological Process | 0.0 | - |
Sma3 | proteolysis | GO:0006508 | Biological Process | 0.0 | - |
Sma3 | DNA integration | GO:0015074 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Reverse transcriptase | IPR000477 | - | 0.0 | - |
Sma3 | Protein kinase, catalytic domain | IPR000719 | - | 0.0 | - |
Sma3 | Chromo domain/shadow | IPR000953 | - | 0.0 | - |
Sma3 | Integrase, catalytic core | IPR001584 | - | 0.0 | - |
Sma3 | Leucine-rich repeat | IPR001611 | - | 0.0 | - |
Sma3 | Peptidase aspartic, active site | IPR001969 | - | 0.0 | - |
Sma3 | Intron-encoded nuclease 2 | IPR003611 | - | 0.0 | - |
Sma3 | Retrotransposon gag protein | IPR005162 | - | 0.0 | - |
Sma3 | Sugar transporter, conserved site | IPR005829 | - | 0.0 | - |
Sma3 | Serine/threonine-protein kinase, active site | IPR008271 | - | 0.0 | - |
Sma3 | Reverse transcriptase, RNA-dependent DNA polymerase | IPR013103 | - | 0.0 | - |
Sma3 | Leucine-rich repeat-containing N-terminal, type 2 | IPR013210 | - | 0.0 | - |
Sma3 | Retroviral aspartyl protease | IPR013242 | - | 0.0 | - |
Sma3 | Protein kinase, ATP binding site | IPR017441 | - | 0.0 | - |
Sma3 | IPR017442 | - | 0.0 | - |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: tr_plants
Fln subject: A5BJ41
Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 60 - 1366
Fln protein:
R
Protein Length:
61
Fln nts:
A
Fln Alignment:
G5KS2UX02FTBLF___RLQPYKQTSLKDKGCQKLSTKFYVPYRVLQHIGEVTYKLALPPTAKIHPVFHVSCLKKAI
A5BJ41_______________RLQPYKQQSVVQRRNLKLSPRFYGPYRVLEKIGTVAYRLELPPEAKIHPVFHVSCLKEKL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain